UCSF ChimeraX: Tools for structure building and analysis von Meng, Elaine C., Goddard, Thomas D., Pettersen, Eric F., Couch, Greg S., Pearson, Zach J., Morris, John H., Ferrin, Thomas E.

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UCSF ChimeraX: Structure visualization for researchers, educators, and developers von Pettersen, Eric F., Goddard, Thomas D., Huang, Conrad C., Meng, Elaine C., Couch, Gregory S., Croll, Tristan I., Morris, John H., Ferrin, Thomas E.

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UCSF ChimeraX: Meeting modern challenges in visualization and analysis von Goddard, Thomas D., Huang, Conrad C., Meng, Elaine C., Pettersen, Eric F., Couch, Gregory S., Morris, John H., Ferrin, Thomas E.

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clusterMaker: a multi-algorithm clustering plugin for Cytoscape von Morris, John H, Apeltsin, Leonard, Newman, Aaron M, Baumbach, Jan, Wittkop, Tobias, Su, Gang, Bader, Gary D, Ferrin, Thomas E

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Using sequence similarity networks for visualization of relationships across diverse protein superfamilies von Atkinson, Holly J, Morris, John H, Ferrin, Thomas E, Babbitt, Patricia C

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RRDistMaps: a UCSF Chimera tool for viewing and comparing protein distance maps von Chen, Jonathan E, Huang, Conrad C, Ferrin, Thomas E

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UCSF Chimera-A visualization system for exploratory research and analysis von Pettersen, Eric F., Goddard, Thomas D., Huang, Conrad C., Couch, Gregory S., Greenblatt, Daniel M., Meng, Elaine C., Ferrin, Thomas E.

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Actin-based protrusions of migrating neutrophils are intrinsically lamellar and facilitate direction changes von Fritz-Laylin, Lillian K, Riel-Mehan, Megan, Chen, Bi-Chang, Lord, Samuel J, Goddard, Thomas D, Ferrin, Thomas E, Nicholson-Dykstra, Susan M, Higgs, Henry, Johnson, Graham T, Betzig, Eric, Mullins, R Dyche

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Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop von Sali, Andrej, Berman, Helen M., Schwede, Torsten, Trewhella, Jill, Kleywegt, Gerard, Burley, Stephen K., Markley, John, Nakamura, Haruki, Adams, Paul, Bonvin, Alexandre M.J.J., Chiu, Wah, Peraro, Matteo Dal, Di Maio, Frank, Ferrin, Thomas E., Grünewald, Kay, Gutmanas, Aleksandras, Henderson, Richard, Hummer, Gerhard, Iwasaki, Kenji, Johnson, Graham, Lawson, Catherine L., Meiler, Jens, Marti-Renom, Marc A., Montelione, Gaetano T., Nilges, Michael, Nussinov, Ruth, Patwardhan, Ardan, Rappsilber, Juri, Read, Randy J., Saibil, Helen, Schröder, Gunnar F., Schwieters, Charles D., Seidel, Claus A.M., Svergun, Dmitri, Topf, Maya, Ulrich, Eldon L., Velankar, Sameer, Westbrook, John D.

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Tools for integrated sequence-structure analysis with UCSF Chimera von Meng, Elaine C, Pettersen, Eric F, Couch, Gregory S, Huang, Conrad C, Ferrin, Thomas E

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Role of organic cation transporter 3 (SLC22A3) and its missense variants in the pharmacologic action of metformin von Chen, Ligong, Pawlikowski, Bradley, Schlessinger, Avner, More, Swati S, Stryke, Doug, Johns, Susan J, Portman, Michael A, Chen, Eugene, Ferrin, Thomas E, Sali, Andrej, Giacomini, Kathleen M

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Clinical Persistence of Chlamydia trachomatis Sexually Transmitted Strains Involves Novel Mutations in the Functional αββα Tetramer of the Tryptophan Synthase Operon von Somboonna, Naraporn, Ziklo, Noa, Ferrin, Thomas E, Hyuk Suh, Jung, Dean, Deborah

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Multidomain Assembler (MDA) Generates Models of Large Multidomain Proteins von Hertig, Samuel, Goddard, Thomas D., Johnson, Graham T., Ferrin, Thomas E.

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An Atlas of Peroxiredoxins Created Using an Active Site Profile-Based Approach to Functionally Relevant Clustering of Proteins von Harper, Angela F, Leuthaeuser, Janelle B, Babbitt, Patricia C, Morris, John H, Ferrin, Thomas E, Poole, Leslie B, Fetrow, Jacquelyn S

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Comparison of human solute carriers von Schlessinger, Avner, Matsson, Pär, Shima, James E., Pieper, Ursula, Yee, Sook Wah, Kelly, Libusha, Apeltsin, Leonard, Stroud, Robert M., Ferrin, Thomas E., Giacomini, Kathleen M., Sali, Andrej

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UCSF Chimera, MODELLER, and IMP: An integrated modeling system von Yang, Zheng, Lasker, Keren, Schneidman-Duhovny, Dina, Webb, Ben, Huang, Conrad C., Pettersen, Eric F., Goddard, Thomas D., Meng, Elaine C., Sali, Andrej, Ferrin, Thomas E.

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Molecular Visualization on the Holodeck von Goddard, Thomas D., Brilliant, Alan A., Skillman, Thomas L., Vergenz, Steven, Tyrwhitt-Drake, James, Meng, Elaine C., Ferrin, Thomas E.

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Visualizing density maps with UCSF Chimera von Goddard, Thomas D., Huang, Conrad C., Ferrin, Thomas E.

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Leveraging Enzyme Structure−Function Relationships for Functional Inference and Experimental Design:  The Structure−Function Linkage Database von Pegg, Scott C.-H, Brown, Shoshana D, Ojha, Sunil, Seffernick, Jennifer, Meng, Elaine C, Morris, John H, Chang, Patricia J, Huang, Conrad C, Ferrin, Thomas E, Babbitt, Patricia C

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Evolutionary Conservation Predicts Function of Variants of the Human Organic Cation Transporter, OCT1 von Shu, Yan, Leabman, Maya K., Feng, Bo, Mangravite, Lara M., Huang, Conrad C., Stryke, Doug, Kawamoto, Michiko, Johns, Susan J., DeYoung, Joseph, Carlson, Elaine, Ferrin, Thomas E., Herskowitz, Ira, Giacomini, Kathleen M., Pharmacogenetics of Membrane Transporters Investigators

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