SUPPA2: fast, accurate, and uncertainty-aware differential splicing analysis across multiple conditions von Trincado, Juan L, Entizne, Juan C, Hysenaj, Gerald, Singh, Babita, Skalic, Miha, Elliott, David J, Eyras, Eduardo

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Detection of recurrent alternative splicing switches in tumor samples reveals novel signatures of cancer von Sebestyén, Endre, Zawisza, Michał, Eyras, Eduardo

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The Functional Impact of Alternative Splicing in Cancer von Climente-González, Héctor, Porta-Pardo, Eduard, Godzik, Adam, Eyras, Eduardo

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Systematic benchmarking of tools for CpG methylation detection from nanopore sequencing von Yuen, Zaka Wing-Sze, Srivastava, Akanksha, Daniel, Runa, McNevin, Dennis, Jack, Cameron, Eyras, Eduardo

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IRFinder: assessing the impact of intron retention on mammalian gene expression von Middleton, Robert, Gao, Dadi, Thomas, Aubin, Singh, Babita, Au, Amy, Wong, Justin J-L, Bomane, Alexandra, Cosson, Bertrand, Eyras, Eduardo, Rasko, John E J, Ritchie, William

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RBM5, 6, and 10 Differentially Regulate NUMB Alternative Splicing to Control Cancer Cell Proliferation von Bechara, Elias G., Sebestyén, Endre, Bernardis, Isabella, Eyras, Eduardo, Valcárcel, Juan

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Ribosome profiling at isoform level reveals evolutionary conserved impacts of differential splicing on the proteome von Reixachs-Solé, Marina, Ruiz-Orera, Jorge, Albà, M. Mar, Eyras, Eduardo

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The translational landscape of the splicing factor SRSF1 and its role in mitosis von Maslon, Magdalena M, Heras, Sara R, Bellora, Nicolas, Eyras, Eduardo, Cáceres, Javier F

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Leveraging transcript quantification for fast computation of alternative splicing profiles von Alamancos, Gael P, Pagès, Amadís, Trincado, Juan L, Bellora, Nicolás, Eyras, Eduardo

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PACIFIC: a lightweight deep-learning classifier of SARS-CoV-2 and co-infecting RNA viruses von Acera Mateos, Pablo, Balboa, Renzo F., Easteal, Simon, Eyras, Eduardo, Patel, Hardip R.

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Dual function of C/D box small nucleolar RNAs in rRNA modification and alternative pre-mRNA splicing von Falaleeva, Marina, Pages, Amadis, Matuszek, Zaneta, Hidmi, Sana, Agranat-Tamir, Lily, Korotkov, Konstantin, Nevo, Yuval, Eyras, Eduardo, Sperling, Ruth, Stamm, Stefan

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Biochemical-free enrichment or depletion of RNA classes in real-time during direct RNA sequencing with RISER von Sneddon, Alexandra, Ravindran, Agin, Shanmuganandam, Somasundhari, Kanchi, Madhu, Hein, Nadine, Jiang, Simon, Shirokikh, Nikolay, Eyras, Eduardo

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Genome-wide association between branch point properties and alternative splicing von Corvelo, André, Hallegger, Martina, Smith, Christopher W J, Eyras, Eduardo

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RATTLE: reference-free reconstruction and quantification of transcriptomes from Nanopore sequencing von de la Rubia, Ivan, Srivastava, Akanksha, Xue, Wenjing, Indi, Joel A., Carbonell-Sala, Silvia, Lagarde, Julien, Albà, M. Mar, Eyras, Eduardo

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The alternative splicing program of differentiated smooth muscle cells involves concerted non-productive splicing of post-transcriptional regulators von Llorian, Miriam, Gooding, Clare, Bellora, Nicolas, Hallegger, Martina, Buckroyd, Adrian, Wang, Xiao, Rajgor, Dipen, Kayikci, Melis, Feltham, Jack, Ule, Jernej, Eyras, Eduardo, Smith, Christopher W J

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The role of alternative splicing in cancer von Singh, Babita, Eyras, Eduardo

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Pyicos: a versatile toolkit for the analysis of high-throughput sequencing data von Althammer, Sonja, González-Vallinas, Juan, Ballaré, Cecilia, Beato, Miguel, Eyras, Eduardo

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The RNA-binding landscape of RBM10 and its role in alternative splicing regulation in models of mouse early development von Rodor, Julie, FitzPatrick, David R., Eyras, Eduardo, Cáceres, Javier F.

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A Broad Set of Chromatin Factors Influences Splicing von Allemand, Eric, Myers, Michael P, Garcia-Bernardo, Jose, Harel-Bellan, Annick, Krainer, Adrian R, Muchardt, Christian

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Large-scale analysis of genome and transcriptome alterations in multiple tumors unveils novel cancer-relevant splicing networks von Sebestyén, Endre, Singh, Babita, Miñana, Belén, Pagès, Amadís, Mateo, Francesca, Pujana, Miguel Angel, Valcárcel, Juan, Eyras, Eduardo

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