Benefits from the joint analysis of host genomes and metagenomes: Select the holobiont von Estellé, Jordi

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Characterization of bacterial microbiota compositions along the intestinal tract in pigs and their interactions and functions von Crespo-Piazuelo, Daniel, Estellé, Jordi, Revilla, Manuel, Criado-Mesas, Lourdes, Ramayo-Caldas, Yuliaxis, Óvilo, Cristina, Fernández, Ana I., Ballester, Maria, Folch, Josep M.

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Fast computation and applications of genome mappability von Derrien, Thomas, Estellé, Jordi, Marco Sola, Santiago, Knowles, David G, Raineri, Emanuele, Guigó, Roderic, Ribeca, Paolo

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Chronic Trichuris muris Infection Decreases Diversity of the Intestinal Microbiota and Concomitantly Increases the Abundance of Lactobacilli von Holm, Jacob Bak, Sorobetea, Daniel, Kiilerich, Pia, Ramayo-Caldas, Yuliaxis, Estellé, Jordi, Ma, Tao, Madsen, Lise, Kristiansen, Karsten, Svensson-Frej, Marcus

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Phylogenetic network analysis applied to pig gut microbiota identifies an ecosystem structure linked with growth traits von Ramayo-Caldas, Yuliaxis, Mach, Nuria, Lepage, Patricia, Levenez, Florence, Denis, Catherine, Lemonnier, Gaetan, Leplat, Jean-Jacques, Billon, Yvon, Berri, Mustapha, Doré, Jöel, Rogel-Gaillard, Claire, Estellé, Jordi

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Early-life establishment of the swine gut microbiome and impact on host phenotypes von Mach, Núria, Berri, Mustapha, Estellé, Jordi, Levenez, Florence, Lemonnier, Gaëtan, Denis, Catherine, Leplat, Jean-Jacques, Chevaleyre, Claire, Billon, Yvon, Doré, Joël, Rogel-Gaillard, Claire, Lepage, Patricia

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A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis von Dillies, Marie-Agnès, Rau, Andrea, Aubert, Julie, Hennequet-Antier, Christelle, Jeanmougin, Marine, Servant, Nicolas, Keime, Céline, Marot, Guillemette, Castel, David, Estelle, Jordi, Guernec, Gregory, Jagla, Bernd, Jouneau, Luc, Laloë, Denis, Le Gall, Caroline, Schaëffer, Brigitte, Le Crom, Stéphane, Guedj, Mickaël, Jaffrézic, Florence

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Liver transcriptome profile in pigs with extreme phenotypes of intramuscular fatty acid composition von Ramayo-Caldas, Yuliaxis, Mach, Nuria, Esteve-Codina, Anna, Corominas, Jordi, Castelló, Anna, Ballester, Maria, Estellé, Jordi, Ibáñez-Escriche, Noelia, Fernández, Ana I, Pérez-Enciso, Miguel, Folch, Josep M

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Early Salmonella Typhimurium infection in pigs disrupts Microbiome composition and functionality principally at the ileum mucosa von Argüello, Héctor, Estellé, Jordi, Zaldívar-López, Sara, Jiménez-Marín, Ángeles, Carvajal, Ana, López-Bascón, Mª Asunción, Crispie, Fiona, O’Sullivan, Orla, Cotter, Paul D., Priego-Capote, Feliciano, Morera, Luis, Garrido, Juan J.

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Differences in muscle transcriptome among pigs phenotypically extreme for fatty acid composition von Puig-Oliveras, Anna, Ramayo-Caldas, Yuliaxis, Corominas, Jordi, Estellé, Jordi, Pérez-Montarelo, Dafne, Hudson, Nicholas J, Casellas, Joaquim, Folch, Josep M, Ballester, Maria

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Identification of rumen microbial biomarkers linked to methane emission in Holstein dairy cows von Ramayo‐Caldas, Yuliaxis, Zingaretti, Laura, Popova, Milka, Estellé, Jordi, Bernard, Aurelien, Pons, Nicolas, Bellot, Pau, Mach, Núria, Rau, Andrea, Roume, Hugo, Perez‐Enciso, Miguel, Faverdin, Philippe, Edouard, Nadège, Ehrlich, Dusko, Morgavi, Diego P., Renand, Gilles

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Association between the pig genome and its gut microbiota composition von Crespo-Piazuelo, Daniel, Migura-Garcia, Lourdes, Estellé, Jordi, Criado-Mesas, Lourdes, Revilla, Manuel, Castelló, Anna, Muñoz, María, García-Casco, Juan M., Fernández, Ana I., Ballester, Maria, Folch, Josep M.

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Malignant features of minipig melanomas prior to spontaneous regression von Débare, Héloïse, Blanc, Fany, Piton, Guillaume, Leplat, Jean-Jacques, Vincent-Naulleau, Silvia, Rivière, Julie, Vilotte, Marthe, Marthey, Sylvain, Lecardonnel, Jérôme, Coville, Jean-Luc, Estellé, Jordi, Rau, Andrea, Bourneuf, Emmanuelle, Egidy, Giorgia

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Comparative analysis of the caecal tonsil transcriptome in two chicken lines experimentally infected with Salmonella Enteritidis von Cazals, Anaïs, Rau, Andrea, Estellé, Jordi, Bruneau, Nicolas, Coville, Jean-Luc, Menanteau, Pierrette, Rossignol, Marie-Noëlle, Jardet, Deborah, Bevilacqua, Claudia, Bed'Hom, Bertrand, Velge, Philippe, Calenge, Fanny

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Broilers divergently selected for digestibility differ for their digestive microbial ecosystems von Borey, Marion, Estelle, Jordi, Caidi, Aziza, Bruneau, Nicolas, Coville, Jean-Luc, Hennequet-Antier, Christelle, Mignon-Grasteau, Sandrine, Calenge, Fanny

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Analysis of porcine adipose tissue transcriptome reveals differences in de novo fatty acid synthesis in pigs with divergent muscle fatty acid composition von Corominas, Jordi, Ramayo-Caldas, Yuliaxis, Puig-Oliveras, Anna, Estellé, Jordi, Castelló, Anna, Alves, Estefania, Pena, Ramona N, Ballester, Maria, Folch, Josep M

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Caecal microbiota composition of experimental inbred MHC-B lines infected with IBV differs according to genetics and vaccination von Borey, Marion, Bed’Hom, Bertrand, Bruneau, Nicolas, Estellé, Jordi, Larsen, Frederik, Blanc, Fany, der Laan, Marie-Hélène Pinard-van, Dalgaard, Tina, Calenge, Fanny

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A co-association network analysis of the genetic determination of pig conformation, growth and fatness von Puig-Oliveras, Anna, Ballester, Maria, Corominas, Jordi, Revilla, Manuel, Estellé, Jordi, Fernández, Ana I, Ramayo-Caldas, Yuliaxis, Folch, Josep M

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Influence of genetic background and dietary oleic acid on gut microbiota composition in Duroc and Iberian pigs von Lopez-Garcia, Adrian, Benitez, Rita, Nunez, Yolanda, Gomez-Izquierdo, Emilio, de Mercado, Eduardo, Garcia-Casco, Juan M., Gonzalez-Recio, Oscar, Lopez-Bote, Clemente, Estelle, Jordi, Ovilo, Cristina

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Tuning of Natural Killer Cell Reactivity by NKp46 and Helios Calibrates T Cell Responses von Narni-Mancinelli, Emilie, Jaeger, Baptiste N., Bernat, Claire, Fenis, Aurore, Kung, Sam, De Gassart, Aude, Mahmood, Sajid, Gut, Marta, Heath, Simon C., Estellé, Jordi, Bertosio, Elodie, Vely, Frédéric, Gastinel, Louis N., Beutler, Bruce, Malissen, Bernard, Malissen, Marie, Gut, Ivo G., Vivier, Eric, Ugolini, Sophie

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