Global reference mapping of human transcription factor footprints von Vierstra, Jeff, Lazar, John, Sandstrom, Richard, Halow, Jessica, Lee, Kristen, Bates, Daniel, Diegel, Morgan, Dunn, Douglas, Neri, Fidencio, Haugen, Eric, Rynes, Eric, Reynolds, Alex, Nelson, Jemma, Johnson, Audra, Frerker, Mark, Buckley, Michael, Kaul, Rajinder, Meuleman, Wouter, Stamatoyannopoulos, John A.

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Index and biological spectrum of human DNase I hypersensitive sites von Meuleman, Wouter, Muratov, Alexander, Rynes, Eric, Halow, Jessica, Lee, Kristen, Bates, Daniel, Diegel, Morgan, Dunn, Douglas, Neri, Fidencio, Teodosiadis, Athanasios, Reynolds, Alex, Haugen, Eric, Nelson, Jemma, Johnson, Audra, Frerker, Mark, Buckley, Michael, Sandstrom, Richard, Vierstra, Jeff, Kaul, Rajinder, Stamatoyannopoulos, John

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Accurate prediction of core-level spectra of radicals at density functional theory cost via square gradient minimization and recoupling of mixed configurations von Hait, Diptarka, Haugen, Eric A., Yang, Zheyue, Oosterbaan, Katherine J., Leone, Stephen R., Head-Gordon, Martin

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Single-molecule regulatory architectures captured by chromatin fiber sequencing von Stergachis, Andrew B, Debo, Brian M, Haugen, Eric, Churchman, L Stirling, Stamatoyannopoulos, John A

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Spin Coupling Effect on Geometry-Dependent X‑Ray Absorption of Diradicals von Garner, Scott M., Haugen, Eric A., Leone, Stephen R., Neuscamman, Eric

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BEDOPS: high-performance genomic feature operations von NEPH, Shane, KUEHN, M. Scott, SANDSTROM, Richard, HUMBERT, Richard, STAMATOYANNOPOULOS, John A, REYNOLDS, Alex P, HAUGEN, Eric, THURMAN, Robert E, JOHNSON, Audra K, RYNES, Eric, MAURANO, Matthew T, VIERSTRA, Jeff, THOMAS, Sean

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Systematic Localization of Common Disease-Associated Variation in Regulatory DNA von Maurano, Matthew T., Humbert, Richard, Rynes, Eric, Thurman, Robert E., Haugen, Eric, Wang, Hao, Reynolds, Alex P., Sandstrom, Richard, Qu, Hongzhu, Brody, Jennifer, Shafer, Anthony, Neri, Fidencio, Lee, Kristen, Kutyavin, Tanya, Stehling-Sun, Sandra, Johnson, Audra K., Canfield, Theresa K., Giste, Erika, Diegel, Morgan, Bates, Daniel, Hansen, R. Scott, Neph, Shane, Sabo, Peter J., Heimfeld, Shelly, Raubitschek, Antony, Ziegler, Steven, Cotsapas, Chris, Sotoodehnia, Nona, Glass, Ian, Sunyaev, Shamil R., Kaul, Rajinder, Stamatoyannopoulos, John A.

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Femtosecond symmetry breaking and coherent relaxation of methane cations via x-ray spectroscopy von Ridente, Enrico, Hait, Diptarka, Haugen, Eric A, Ross, Andrew D, Neumark, Daniel M, Head-Gordon, Martin, Leone, Stephen R

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The accessible chromatin landscape of the human genome von Thurman, Robert E., Rynes, Eric, Humbert, Richard, Vierstra, Jeff, Maurano, Matthew T., Haugen, Eric, Sheffield, Nathan C., Stergachis, Andrew B., Wang, Hao, Vernot, Benjamin, Garg, Kavita, John, Sam, Sandstrom, Richard, Bates, Daniel, Boatman, Lisa, Canfield, Theresa K., Diegel, Morgan, Dunn, Douglas, Ebersol, Abigail K., Frum, Tristan, Giste, Erika, Johnson, Audra K., Johnson, Ericka M., Kutyavin, Tanya, Lajoie, Bryan, Lee, Bum-Kyu, Lee, Kristen, London, Darin, Lotakis, Dimitra, Neph, Shane, Neri, Fidencio, Nguyen, Eric D., Qu, Hongzhu, Reynolds, Alex P., Roach, Vaughn, Safi, Alexias, Sanchez, Minerva E., Sanyal, Amartya, Shafer, Anthony, Simon, Jeremy M., Song, Lingyun, Vong, Shinny, Weaver, Molly, Yan, Yongqi, Zhang, Zhancheng, Zhang, Zhuzhu, Lenhard, Boris, Tewari, Muneesh, Dorschner, Michael O., Hansen, R. Scott, Navas, Patrick A., Stamatoyannopoulos, George, Iyer, Vishwanath R., Lieb, Jason D., Sunyaev, Shamil R., Akey, Joshua M., Sabo, Peter J., Kaul, Rajinder, Furey, Terrence S., Dekker, Job, Crawford, Gregory E., Stamatoyannopoulos, John A.

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Ultrafast X‑ray Spectroscopy of Intersystem Crossing in Hexafluoroacetylacetone: Chromophore Photophysics and Spectral Changes in the Face of Electron-Withdrawing Groups von Haugen, Eric A., Hait, Diptarka, Scutelnic, Valeriu, Xue, Tian, Head-Gordon, Martin, Leone, Stephen R.

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Exonic Transcription Factor Binding Directs Codon Choice and Affects Protein Evolution von Stergachis, Andrew B., Haugen, Eric, Shafer, Anthony, Fu, Wenqing, LeProust, M., Akey, Joshua M., Stamatoyannopoulos, John A.

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Jahn-Teller distortion and dissociation of CCl4+ by transient X-ray spectroscopy simultaneously at the carbon K- and chlorine L-edge von Ross, Andrew D, Hait, Diptarka, Scutelnic, Valeriu, Haugen, Eric A, Ridente, Enrico, Balkew, Mikias B, Neumark, Daniel M, Head-Gordon, Martin, Leone, Stephen R

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Integrative analysis of 3604 GWAS reveals multiple novel cell type-specific regulatory associations von Breeze, Charles E, Haugen, Eric, Reynolds, Alex, Teschendorff, Andrew, van Dongen, Jenny, Lan, Qing, Rothman, Nathaniel, Bourque, Guillaume, Dunham, Ian, Beck, Stephan, Stamatoyannopoulos, John, Franceschini, Nora, Berndt, Sonja I

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Conservation of trans-acting circuitry during mammalian regulatory evolution von Stergachis, Andrew B., Neph, Shane, Sandstrom, Richard, Haugen, Eric, Reynolds, Alex P., Zhang, Miaohua, Byron, Rachel, Canfield, Theresa, Stelhing-Sun, Sandra, Lee, Kristen, Thurman, Robert E., Vong, Shinny, Bates, Daniel, Neri, Fidencio, Diegel, Morgan, Giste, Erika, Dunn, Douglas, Vierstra, Jeff, Hansen, R. Scott, Johnson, Audra K., Sabo, Peter J., Wilken, Matthew S., Reh, Thomas A., Treuting, Piper M., Kaul, Rajinder, Groudine, Mark, Bender, M. A., Borenstein, Elhanan, Stamatoyannopoulos, John A.

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FORGEdb: a tool for identifying candidate functional variants and uncovering target genes and mechanisms for complex diseases von Breeze, Charles E, Haugen, Eric, Gutierrez-Arcelus, María, Yao, Xiaozheng, Teschendorff, Andrew, Beck, Stephan, Dunham, Ian, Stamatoyannopoulos, John, Franceschini, Nora, Machiela, Mitchell J, Berndt, Sonja I

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Correction: Jahn-Teller distortion and dissociation of CCl4+ by transient X-ray spectroscopy simultaneously at the carbon K- and chlorine L-edge von Ross, Andrew D, Hait, Diptarka, Scutelnic, Valeriu, Haugen, Eric A, Ridente, Enrico, Balkew, Mikias B, Neumark, Daniel M, Head-Gordon, Martin, Leone, Stephen R

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Reduced local mutation density in regulatory DNA of cancer genomes is linked to DNA repair von Polak, Paz, Lawrence, Michael S, Haugen, Eric, Stoletzki, Nina, Stojanov, Petar, Thurman, Robert E, Garraway, Levi A, Mirkin, Sergei, Getz, Gad, Stamatoyannopoulos, John A, Sunyaev, Shamil R

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Mapping and sequencing of structural variation from eight human genomes von Eichler, Evan E, Kidd, Jeffrey M, Cooper, Gregory M, Donahue, William F, Hayden, Hillary S, Sampas, Nick, Graves, Tina, Hansen, Nancy, Teague, Brian, Alkan, Can, Antonacci, Francesca, Haugen, Eric, Zerr, Troy, Yamada, N. Alice, Tsang, Peter, Newman, Tera L, Tüzün, Eray, Cheng, Ze, Ebling, Heather M, Tusneem, Nadeem, David, Robert, Gillett, Will, Phelps, Karen A, Weaver, Molly, Saranga, David, Brand, Adrianne, Tao, Wei, Gustafson, Erik, McKernan, Kevin, Chen, Lin, Malig, Maika, Smith, Joshua D, Korn, Joshua M, McCarroll, Steven A, Altshuler, David A, Peiffer, Daniel A, Dorschner, Michael, Stamatoyannopoulos, John, Schwartz, David, Nickerson, Deborah A, Mullikin, James C, Wilson, Richard K, Bruhn, Laurakay, Olson, Maynard V, Kaul, Rajinder, Smith, Douglas R

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Polymyxin Resistance of Pseudomonas aeruginosa phoQ Mutants Is Dependent on Additional Two-Component Regulatory Systems von GUTU, Alina D, SGAMBATI, Nicole, STRASBOURGER, Pnina, BRANNON, Mark K, JACOBS, Michael A, HAUGEN, Eric, KAUL, Rajinder K, JOHANSEN, Helle Krogh, HØIBY, Niels, MOSKOWITZ, Samuel M

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Comprehensive Transposon Mutant Library of Pseudomonas aeruginosa von Jacobs, Michael A., Alwood, Ashley, Thaipisuttikul, Iyarit, Spencer, David, Haugen, Eric, Ernst, Stephen, Will, Oliver, Kaul, Rajinder, Raymond, Christopher, Levy, Ruth, Chun-Rong, Liu, Guenthner, Donald, Bovee, Donald, Olson, Maynard V., Manoil, Colin

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