Tfold: efficient in silico prediction of non-coding RNA secondary structures von Engelen, Stéfan, Tahi, Fariza

Volltext

Comparison of library preparation methods reveals their impact on interpretation of metatranscriptomic data von Alberti, Adriana, Belser, Caroline, Engelen, Stéfan, Bertrand, Laurie, Orvain, Céline, Brinas, Laura, Cruaud, Corinne, Giraut, Laurène, Da Silva, Corinne, Firmo, Cyril, Aury, Jean-Marc, Wincker, Patrick

Volltext

VarGoats project: a dataset of 1159 whole-genome sequences to dissect Capra hircus global diversity von Denoyelle, Laure, Talouarn, Estelle, Bardou, Philippe, Colli, Licia, Alberti, Adriana, Danchin, Coralie, Del Corvo, Marcello, Engelen, Stefan, Orvain, Celine, Palhiere, Isabelle, Rupp, Rachel, Sarry, Julien, Salavati, Mazdak, Amills, Marcel, Clark, Emily, Crepaldi, Paola, Faraut, Thomas, Masiga, Clet Wandui, Pompanon, Francois, Rosen, Benjamin D., Stella, Alessandra, Van Tassell, Curtis P., Tosser-Klopp, Gwenola

Volltext

Predicting RNA secondary structure by the comparative approach: how to select the homologous sequences von Engelen, Stéfan, Tahi, Fariza

Volltext

Transposition favors the generation of large effect mutations that may facilitate rapid adaption von Quadrana, Leandro, Etcheverry, Mathilde, Gilly, Arthur, Caillieux, Erwann, Madoui, Mohammed-Amin, Guy, Julie, Bortolini Silveira, Amanda, Engelen, Stefan, Baillet, Victoire, Wincker, Patrick, Aury, Jean-Marc, Colot, Vincent

Volltext

Convergent genomic signatures of domestication in sheep and goats von Alberto, Florian J., Boyer, Frédéric, Orozco-terWengel, Pablo, Streeter, Ian, Servin, Bertrand, de Villemereuil, Pierre, Benjelloun, Badr, Librado, Pablo, Biscarini, Filippo, Colli, Licia, Barbato, Mario, Zamani, Wahid, Alberti, Adriana, Engelen, Stefan, Stella, Alessandra, Joost, Stéphane, Ajmone-Marsan, Paolo, Negrini, Riccardo, Orlando, Ludovic, Rezaei, Hamid Reza, Naderi, Saeid, Clarke, Laura, Flicek, Paul, Wincker, Patrick, Coissac, Eric, Kijas, James, Tosser-Klopp, Gwenola, Chikhi, Abdelkader, Bruford, Michael W., Taberlet, Pierre, Pompanon, François

Volltext

BoardION: real-time monitoring of Oxford Nanopore sequencing instruments von Bruno, Aimeric, Aury, Jean-Marc, Engelen, Stefan

Volltext

MicroScope--an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data von Vallenet, David, Belda, Eugeni, Calteau, Alexandra, Cruveiller, Stéphane, Engelen, Stefan, Lajus, Aurélie, Le Fèvre, François, Longin, Cyrille, Mornico, Damien, Roche, David, Rouy, Zoé, Salvignol, Gregory, Scarpelli, Claude, Thil Smith, Adam Alexander, Weiman, Marion, Médigue, Claudine

Volltext

Chromosome-scale assemblies of plant genomes using nanopore long reads and optical maps von Belser, Caroline, Istace, Benjamin, Denis, Erwan, Dubarry, Marion, Baurens, Franc-Christophe, Falentin, Cyril, Genete, Mathieu, Berrabah, Wahiba, Chèvre, Anne-Marie, Delourme, Régine, Deniot, Gwenaëlle, Denoeud, France, Duffé, Philippe, Engelen, Stefan, Lemainque, Arnaud, Manzanares-Dauleux, Maria, Martin, Guillaume, Morice, Jérôme, Noel, Benjamin, Vekemans, Xavier, D’Hont, Angélique, Rousseau-Gueutin, Mathieu, Barbe, Valérie, Cruaud, Corinne, Wincker, Patrick, Aury, Jean-Marc

Volltext

The Rise and Fall of African Rice Cultivation Revealed by Analysis of 246 New Genomes von Cubry, Philippe, Tranchant-Dubreuil, Christine, Thuillet, Anne-Céline, Monat, Cécile, Ndjiondjop, Marie-Noelle, Labadie, Karine, Cruaud, Corinne, Engelen, Stefan, Scarcelli, Nora, Rhoné, Bénédicte, Burgarella, Concetta, Dupuy, Christian, Larmande, Pierre, Wincker, Patrick, François, Olivier, Sabot, François, Vigouroux, Yves

Volltext

FORK-seq: replication landscape of the Saccharomyces cerevisiae genome by nanopore sequencing von Hennion, Magali, Arbona, Jean-Michel, Lacroix, Laurent, Cruaud, Corinne, Theulot, Bertrand, Le Tallec, Benoit, Proux, Florence, Wu, Xia, Novikova, Elizaveta, Engelen, Stefan, Lemainque, Arnaud, Audit, Benjamin, Hyrien, Olivier

Volltext

Real-time SARS-CoV-2 diagnostic and variants tracking over multiple candidates using nanopore DNA sequencing von Stüder, François, Petit, Jean-Louis, Engelen, Stefan, Mendoza-Parra, Marco Antonio

Volltext

Genome-wide mapping of individual replication fork velocities using nanopore sequencing von Theulot, Bertrand, Lacroix, Laurent, Arbona, Jean-Michel, Millot, Gael A., Jean, Etienne, Cruaud, Corinne, Pellet, Jade, Proux, Florence, Hennion, Magali, Engelen, Stefan, Lemainque, Arnaud, Audit, Benjamin, Hyrien, Olivier, Le Tallec, Benoît

Volltext

Long-read assembly of the Brassica napus reference genome Darmor-bzh von Rousseau-Gueutin, Mathieu, Belser, Caroline, Da Silva, Corinne, Richard, Gautier, Istace, Benjamin, Cruaud, Corinne, Falentin, Cyril, Boideau, Franz, Boutte, Julien, Delourme, Regine, Deniot, Gwenaëlle, Engelen, Stefan, de Carvalho, Julie Ferreira, Lemainque, Arnaud, Maillet, Loeiz, Morice, Jérôme, Wincker, Patrick, Denoeud, France, Chèvre, Anne-Marie, Aury, Jean-Marc

Volltext

Genomic reconstruction of the successful establishment of a feralized bovine population on the subantarctic island of Amsterdam von Gautier, Mathieu, Micol, Thierry, Camus, Louise, Moazami-Goudarzi, Katayoun, Naves, Michel, Guéret, Elise, Engelen, Stéfan, Lemainque, Arnaud, Colas, François, Flori, Laurence, Druet, Tom

Volltext

Author Correction: A framework for in situ molecular characterization of coral holobionts using nanopore sequencing von Carradec, Quentin, Poulain, Julie, Boissin, Emilie, Hume, Benjamin C. C., Voolstra, Christian R., Ziegler, Maren, Engelen, Stefan, Cruaud, Corinne, Planes, Serge, Wincker, Patrick

Volltext

Joint evolutionary trees: a large-scale method to predict protein interfaces based on sequence sampling von Engelen, Stefan, Trojan, Ladislas A, Sacquin-Mora, Sophie, Lavery, Richard, Carbone, Alessandra

Volltext

Distinct co-evolution patterns of genes associated to DNA polymerase III DnaE and PolC von Engelen, Stefan, Vallenet, David, Médigue, Claudine, Danchin, Antoine

Volltext

DuplicationDetector, a light weight tool for duplication detection using NGS data von Djedatin, Gustave, Monat, Cécile, Engelen, Stefan, Sabot, Francois

Volltext

Genome evolution across 1,011 Saccharomyces cerevisiae isolates von Peter, Jackson, De Chiara, Matteo, Friedrich, Anne, Yue, Jia-Xing, Pflieger, David, Bergström, Anders, Sigwalt, Anastasie, Barre, Benjamin, Freel, Kelle, Llored, Agnès, Cruaud, Corinne, Labadie, Karine, Aury, Jean-Marc, Istace, Benjamin, Lebrigand, Kevin, Barbry, Pascal, Engelen, Stefan, Lemainque, Arnaud, Wincker, Patrick, Liti, Gianni, Schacherer, Joseph

Volltext