Extensive introgression in a malaria vector species complex revealed by phylogenomics von Fontaine, Michael C., Pease, James B., Steele, Aaron, Waterhouse, Robert M., Neafsey, Daniel E., Sharakhov, Igor V., Jiang, Xiaofang, Hall, Andrew B., Catteruccia, Flaminia, Kakani, Evdoxia, Mitchell, Sara N., Wu, Yi-Chieh, Smith, Hilary A., Love, R. Rebecca, Lawniczak, Mara K., Slotman, Michel A., Emrich, Scott J., Hahn, Matthew W., Besansky, Nora J.

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Assessing De Novo transcriptome assembly metrics for consistency and utility von O'Neil, Shawn T, Emrich, Scott J

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Detecting inversions with PCA in the presence of population structure von Nowling, Ronald J, Manke, Krystal R, Emrich, Scott J

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Analysis of computational codon usage models and their association with translationally slow codons von Wright, Gabriel, Rodriguez, Anabel, Li, Jun, Clark, Patricia L, Milenković, Tijana, Emrich, Scott J

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Whole genome comparisons reveal panmixia among fall armyworm (Spodoptera frugiperda) from diverse locations von Schlum, Katrina A, Lamour, Kurt, de Bortoli, Caroline Placidi, Banerjee, Rahul, Meagher, Robert, Pereira, Eliseu, Murua, Maria Gabriela, Sword, Gregory A, Tessnow, Ashley E, Viteri Dillon, Diego, Linares Ramirez, Angela M, Akutse, Komivi S, Schmidt-Jeffris, Rebecca, Huang, Fangneng, Reisig, Dominic, Emrich, Scott J, Jurat-Fuentes, Juan Luis

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Gene discovery and annotation using LCM-454 transcriptome sequencing von Emrich, Scott J, Barbazuk, W Brad, Li, Li, Schnable, Patrick S

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VectorBase: improvements to a bioinformatics resource for invertebrate vector genomics von Megy, Karine, Emrich, Scott J., Lawson, Daniel, Campbell, David, Dialynas, Emmanuel, Hughes, Daniel S.T., Koscielny, Gautier, Louis, Christos, MacCallum, Robert M., Redmond, Seth N., Sheehan, Andrew, Topalis, Pantelis, Wilson, Derek

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SNP discovery via 454 transcriptome sequencing von Barbazuk, W. Brad, Emrich, Scott J, Chen, Hsin D, Li, Li, Schnable, Patrick S

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Population-level transcriptome sequencing of nonmodel organisms Erynnis propertius and Papilio zelicaon von O'Neil, Shawn T, Dzurisin, Jason D K, Carmichael, Rory D, Lobo, Neil F, Emrich, Scott J, Hellmann, Jessica J

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Radical remodeling of the Y chromosome in a recent radiation of malaria mosquitoes von Hall, Andrew Brantley, Papathanos, Philippos-Aris, Sharma, Atashi, Cheng, Changde, Akbari, Omar S., Assour, Lauren, Bergman, Nicholas H., Cagnetti, Alessia, Crisanti, Andrea, Dottorini, Tania, Fiorentini, Elisa, Galizi, Roberto, Hnath, Jonathan, Jiang, Xiaofang, Koren, Sergey, Nolan, Tony, Radune, Diane, Sharakhova, Maria V., Steele, Aaron, Timoshevskiy, Vladimir A., Windbichler, Nikolai, Zhang, Simo, Hahn, Matthew W., Phillippy, Adam M., Emrich, Scott J., Sharakhov, Igor V., Tu, Zhijian Jake, Besansky, Nora J.

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Profiling expression strategies for a type III polyketide synthase in a lysate-based, cell-free system von Sword, Tien T., Dinglasan, Jaime Lorenzo N., Abbas, Ghaeath S. K., Barker, J. William, Spradley, Madeline E., Greene, Elijah R., Gooden, Damian S., Emrich, Scott J., Gilchrist, Michael A., Doktycz, Mitchel J., Bailey, Constance B.

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Chromosomal inversions and ecotypic differentiation in Anopheles gambiae: the perspective from whole-genome sequencing von Love, R. Rebecca, Steele, Aaron M., Coulibaly, Mamadou B., Traore, Sékou F., Emrich, Scott J., Fontaine, Michael C., Besansky, Nora J.

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GRAFENE: Graphlet-based alignment-free network approach integrates 3D structural and sequence (residue order) data to improve protein structural comparison von Faisal, Fazle E., Newaz, Khalique, Chaney, Julie L., Li, Jun, Emrich, Scott J., Clark, Patricia L., Milenković, Tijana

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Highly Accurate and Efficient Data-Driven Methods for Genotype Imputation von Choudhury, Olivia, Chakrabarty, Ankush, Emrich, Scott J.

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Single molecule sequencing-guided scaffolding and correction of draft assemblies von Zhu, Shenglong, Chen, Danny Z, Emrich, Scott J

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Principles of Nuclear Rocket Propulsion von Emrich, William

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Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies von Waterhouse, Robert M, Aganezov, Sergey, Anselmetti, Yoann, Lee, Jiyoung, Ruzzante, Livio, Reijnders, Maarten J M F, Feron, Romain, Bérard, Sèverine, George, Phillip, Hahn, Matthew W, Howell, Paul I, Kamali, Maryam, Koren, Sergey, Lawson, Daniel, Maslen, Gareth, Peery, Ashley, Phillippy, Adam M, Sharakhova, Maria V, Tannier, Eric, Unger, Maria F, Zhang, Simo V, Alekseyev, Max A, Besansky, Nora J, Chauve, Cedric, Emrich, Scott J, Sharakhov, Igor V

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Genome of Rhodnius prolixus, an insect vector of Chagas disease, reveals unique adaptations to hematophagy and parasite infection von Mesquita, Rafael D, Vionette-Amaral, Raquel J, Lowenberger, Carl, Rivera-Pomar, Rolando, Monteiro, Fernando A, Minx, Patrick, Spieth, John, Carvalho, A Bernardo, Panzera, Francisco, Lawson, Daniel, Torres, André Q, Ribeiro, Jose M C, Sorgine, Marcos H F, Waterhouse, Robert M, Montague, Michael J, Abad-Franch, Fernando, Alves-Bezerra, Michele, Amaral, Laurence R, Araujo, Helena M, Araujo, Ricardo N, Aravind, L, Atella, Georgia C, Azambuja, Patricia, Berni, Mateus, Bittencourt-Cunha, Paula R, Braz, Gloria R C, Calderón-Fernández, Gustavo, Carareto, Claudia M A, Christensen, Mikkel B, Costa, Igor R, Costa, Samara G, Dansa, Marilvia, Daumas-Filho, Carlos R O, De-Paula, Iron F, Dias, Felipe A, Dimopoulos, George, Emrich, Scott J, Esponda-Behrens, Natalia, Fampa, Patricia, Fernandez-Medina, Rita D, da Fonseca, Rodrigo N, Fontenele, Marcio, Fronick, Catrina, Fulton, Lucinda A, Gandara, Ana Caroline, Garcia, Eloi S, Genta, Fernando A, Giraldo-Calderón, Gloria I, Gomes, Bruno, Gondim, Katia C, Granzotto, Adriana, Guarneri, Alessandra A, Guigó, Roderic, Harry, Myriam, Hughes, Daniel S T, Jablonka, Willy, Jacquin-Joly, Emmanuelle, Juárez, M Patricia, Koerich, Leonardo B, Lange, Angela B, Latorre-Estivalis, José Manuel, Lavore, Andrés, Lawrence, Gena G, Lazoski, Cristiano, Lazzari, Claudio R, Lopes, Raphael R, Lorenzo, Marcelo G, Lugon, Magda D, Majerowicz, David, Marcet, Paula L, Mariotti, Marco, Masuda, Hatisaburo, Megy, Karine, Melo, Ana C A, Missirlis, Fanis, Mota, Theo, Noriega, Fernando G, Nouzova, Marcela, Nunes, Rodrigo D, Oliveira, Raquel L L, Oliveira-Silveira, Gilbert, Ons, Sheila, Orchard, Ian, Pagola, Lucia, Paiva-Silva, Gabriela O, Pascual, Agustina, Pavan, Marcio G, Pedrini, Nicolás, Peixoto, Alexandre A, Pereira, Marcos H, Pike, Andrew, Polycarpo, Carla, Prosdocimi, Francisco, Ribeiro-Rodrigues, Rodrigo, Robertson, Hugh M, Salerno, Ana Paula, Salmon, Didier, Santesmasses, Didac, Schama, Renata, Seabra-Junior, Eloy S

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PeakMatcher facilitates updated Aedes aegypti embryonic cis-regulatory element map von Nowling, Ronald J, Behura, Susanta K, Halfon, Marc S, Emrich, Scott J, Duman-Scheel, Molly

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B73 Maize Genome: Complexity, Diversity, and Dynamics von Ware, Doreen, Fulton, Robert S, Wei, Fusheng, Pasternak, Shiran, Liang, Chengzhi, Zhang, Jianwei, Fulton, Lucinda, Graves, Tina A, Minx, Patrick, Courtney, Laura, Kruchowski, Scott S, Strong, Cindy, Delehaunty, Kim, Rock, Susan M, Belter, Eddie, Du, Feiyu, Abbott, Rachel M, Marchetto, Pamela, Ochoa, Kerri, Jackson, Stephanie M, Chen, Weizu, Yan, Le, Cardenas, Marco, Waligorski, Jason, Applebaum, Elizabeth, Falcone, Jason, Kanchi, Krishna, Scimone, Adam, Henke, Jessica, Rotter, Kelsi, Hodges, Jennifer, Ingenthron, Elizabeth, Mead, Kelly, Chinwalla, Asif, Leonard, Shawn, Crouse, Kevin, Collura, Kristi, Kudrna, Dave, He, Ruifeng, Angelova, Angelina, Rajasekar, Shanmugam, Mueller, Teri, Lomeli, Rene, Ko, Ara, Delaney, Krista, Lopez, Georgina, Campos, David, Ashley, Elizabeth, Lee, Seunghee, Dujmic, Zeljko, Kim, Woojin, Zuccolo, Andrea, Sebastian, Aswathy, Spiegel, Lori, Nascimento, Lidia, Ambroise, Claude, Spooner, Will, Narechania, Apurva, Ren, Liya, Wei, Sharon, Kumari, Sunita, Faga, Ben, Van Buren, Peter, Yeh, Cheng-Ting, Emrich, Scott J, Jia, Yi, Barbazuk, W. Brad, Baucom, Regina S, Brutnell, Thomas P, Carpita, Nicholas C, Chaparro, Cristian, Chia, Jer-Ming, Estill, James C, Fu, Yan, Jeddeloh, Jeffrey A, Han, Yujun, Lisch, Damon R, McCann, Maureen C, Myers, Alan M, Nguyen, John, Ponnala, Lalit, Schneider, Kevin L, Sharma, Anupma, Sun, Qi, Wang, Hao, Westerman, Richard, Wolfgruber, Thomas K, Yang, Lixing, Yu, Yeisoo, Zhang, Lifang, Zhou, Shiguo, Zhu, Qihui, Bennetzen, Jeffrey L, Dawe, R. Kelly, Jiang, Jiming, Jiang, Ning, Presting, Gernot G, Clifton, Sandra W, McCombie, W. Richard, Wing, Rod A

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