MACSE: Multiple Alignment of Coding SEquences accounting for frameshifts and stop codons von Ranwez, Vincent, Harispe, Sébastien, Delsuc, Frédéric, Douzery, Emmanuel J P

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A glimpse on the pattern of rodent diversification: a phylogenetic approach von Fabre, Pierre-Henri, Hautier, Lionel, Dimitrov, Dimitar, Douzery, Emmanuel J P

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A phylogenomic framework and timescale for comparative studies of tunicates von Delsuc, Frédéric, Philippe, Hervé, Tsagkogeorga, Georgia, Simion, Paul, Tilak, Marie-Ka, Turon, Xavier, López-Legentil, Susanna, Piette, Jacques, Lemaire, Patrick, Douzery, Emmanuel J P

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MACSE v2: Toolkit for the Alignment of Coding Sequences Accounting for Frameshifts and Stop Codons von Ranwez, Vincent, Douzery, Emmanuel J P, Cambon, Cédric, Chantret, Nathalie, Delsuc, Frédéric

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Fast and accurate branch lengths estimation for phylogenomic trees von Binet, Manuel, Gascuel, Olivier, Scornavacca, Celine, Douzery, Emmanuel J P, Pardi, Fabio

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A phylogenetic perspective on the evolution of Mediterranean teleost fishes von Meynard, Christine N, Mouillot, David, Mouquet, Nicolas, Douzery, Emmanuel J P

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The Timing of Eukaryotic Evolution: Does a Relaxed Molecular Clock Reconcile Proteins and Fossils? von Emmanuel J. P. Douzery, Snell, Elizabeth A., Bapteste, Eric, Delsuc, Frédéric, Philippe, Hervé, Li, Wen-Hsiung

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An updated 18S rRNA phylogeny of tunicates based on mixture and secondary structure models von Tsagkogeorga, Georgia, Turon, Xavier, Hopcroft, Russell R, Tilak, Marie-Ka, Feldstein, Tamar, Shenkar, Noa, Loya, Yossi, Huchon, Dorothée, Douzery, Emmanuel J P, Delsuc, Frédéric

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Fast and robust characterization of time-heterogeneous sequence evolutionary processes using substitution mapping von Romiguier, Jonathan, Figuet, Emeric, Galtier, Nicolas, Douzery, Emmanuel J P, Boussau, Bastien, Dutheil, Julien Y, Ranwez, Vincent

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Less is more in mammalian phylogenomics: AT-rich genes minimize tree conflicts and unravel the root of placental mammals von Romiguier, Jonathan, Ranwez, Vincent, Delsuc, Frédéric, Galtier, Nicolas, Douzery, Emmanuel J P

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Accelerated Evolutionary Rate of Housekeeping Genes in Tunicates von Tsagkogeorga, Georgia, Turon, Xavier, Galtier, Nicolas, Douzery, Emmanuel J. P, Delsuc, Frédéric

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Multigenic phylogeny and analysis of tree incongruences in Triticeae (Poaceae) von Escobar, Juan S, Scornavacca, Céline, Cenci, Alberto, Guilhaumon, Claire, Santoni, Sylvain, Douzery, Emmanuel J P, Ranwez, Vincent, Glémin, Sylvain, David, Jacques

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The evolutionary radiation of Arvicolinae rodents (voles and lemmings): relative contribution of nuclear and mitochondrial DNA phylogenies von Galewski, Thomas, Tilak, Marie-ka, Sanchez, Sophie, Chevret, Pascale, Paradis, Emmanuel, Douzery, Emmanuel J P

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Protected and Threatened Components of Fish Biodiversity in the Mediterranean Sea von Mouillot, David, Albouy, Camille, Guilhaumon, François, Ben Rais Lasram, Frida, Coll, Marta, Devictor, Vincent, Meynard, Christine N., Pauly, Daniel, Tomasini, Jean Antoine, Troussellier, Marc, Velez, Laure, Watson, Reg, Douzery, Emmanuel J.P., Mouquet, Nicolas

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Rodents of the Caribbean: origin and diversification of hutias unravelled by next-generation museomics von Fabre, Pierre-Henri, Vilstrup, Julia T., Raghavan, Maanasa, Der Sarkissian, Clio, Willerslev, Eske, Douzery, Emmanuel J. P., Orlando, Ludovic

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Convergent Acquisition of Nonembryonic Development in Styelid Ascidians von Alié, Alexandre, Hiebert, Laurel Sky, Simion, Paul, Scelzo, Marta, Prünster, Maria Mandela, Lotito, Sonia, Delsuc, Frédéric, Douzery, Emmanuel J P, Dantec, Christelle, Lemaire, Patrick, Darras, Sébastien, Kawamura, Kazuo, Brown, Federico D, Tiozzo, Stefano

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Molecular phylogenetics unveils the ancient evolutionary origins of the enigmatic fairy armadillos von Delsuc, Frédéric, Superina, Mariella, Tilak, Marie-Ka, Douzery, Emmanuel J.P., Hassanin, Alexandre

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Molecular and Morphological Phylogenies of Ruminantia and the Alternative Position of the Moschidae von Hassanin, Alexandre, Douzery, Emmanuel J. P., Thorne, Jeff

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PhySIC_IST: cleaning source trees to infer more informative supertrees von Scornavacca, Celine, Berry, Vincent, Lefort, Vincent, Douzery, Emmanuel J P, Ranwez, Vincent

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Arrival and Diversification of Caviomorph Rodents and Platyrrhine Primates in South America von Poux, Céline, Chevret, Pascale, Huchon, Dorothée, de Jong, Wilfried W., Douzery, Emmanuel J. P., Soltis, Pam

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