Functional role of Tet-mediated RNA hydroxymethylcytosine in mouse ES cells and during differentiation von Lan, Jie, Rajan, Nicholas, Bizet, Martin, Penning, Audrey, Singh, Nitesh K., Guallar, Diana, Calonne, Emilie, Li Greci, Andrea, Bonvin, Elise, Deplus, Rachel, Hsu, Phillip J., Nachtergaele, Sigrid, Ma, Chengjie, Song, Renhua, Fuentes-Iglesias, Alejandro, Hassabi, Bouchra, Putmans, Pascale, Mies, Frédérique, Menschaert, Gerben, Wong, Justin J. L., Wang, Jianlong, Fidalgo, Miguel, Yuan, Bifeng, Fuks, François

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Transcriptome-wide distribution and function of RNA hydroxymethylcytosine von Delatte, Benjamin, Wang, Fei, Ngoc, Long Vo, Collignon, Evelyne, Bonvin, Elise, Deplus, Rachel, Calonne, Emilie, Hassabi, Bouchra, Putmans, Pascale, Awe, Stephan, Wetzel, Collin, Kreher, Judith, Soin, Romuald, Creppe, Catherine, Limbach, Patrick A., Gueydan, Cyril, Kruys, Véronique, Brehm, Alexander, Minakhina, Svetlana, Defrance, Matthieu, Steward, Ruth, Fuks, François

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Evaluation of the Infinium Methylation 450K technology von Dedeurwaerder, Sarah, Defrance, Matthieu, Calonne, Emilie, Denis, Hélène, Sotiriou, Christos, Fuks, François

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TET2 and TET3 regulate GlcNAcylation and H3K4 methylation through OGT and SET1/COMPASS von Deplus, Rachel, Delatte, Benjamin, Schwinn, Marie K, Defrance, Matthieu, Méndez, Jacqui, Murphy, Nancy, Dawson, Mark A, Volkmar, Michael, Putmans, Pascale, Calonne, Emilie, Shih, Alan H, Levine, Ross L, Bernard, Olivier, Mercher, Thomas, Solary, Eric, Urh, Marjeta, Daniels, Danette L, Fuks, François

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The transcription factors Runx3 and ThPOK cross-regulate acquisition of cytotoxic function by human Th1 lymphocytes von Serroukh, Yasmina, Gu-Trantien, Chunyan, Hooshiar Kashani, Baharak, Defrance, Matthieu, Vu Manh, Thien-Phong, Azouz, Abdulkader, Detavernier, Aurélie, Hoyois, Alice, Das, Jishnu, Bizet, Martin, Pollet, Emeline, Tabbuso, Tressy, Calonne, Emilie, van Gisbergen, Klaas, Dalod, Marc, Fuks, François, Goriely, Stanislas, Marchant, Arnaud

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EOMES interacts with RUNX3 and BRG1 to promote innate memory cell formation through epigenetic reprogramming von Istaces, Nicolas, Splittgerber, Marion, Lima Silva, Viviana, Nguyen, Muriel, Thomas, Séverine, Le, Aurore, Achouri, Younes, Calonne, Emilie, Defrance, Matthieu, Fuks, François, Goriely, Stanislas, Azouz, Abdulkader

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Improving Infinium MethylationEPIC data processing: re-annotation of enhancers and long noncoding RNA genes and benchmarking of normalization methods von Bizet, Martin, Defrance, Matthieu, Calonne, Emilie, Bontempi, Gianluca, Sotiriou, Christos, Fuks, François, Jeschke, Jana

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Citrullination of DNMT3A by PADI4 regulates its stability and controls DNA methylation von Deplus, Rachel, Denis, Hélène, Putmans, Pascale, Calonne, Emilie, Fourrez, Marie, Yamamoto, Kazuhiko, Suzuki, Akari, Fuks, François

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Methylglyoxal: a novel upstream regulator of DNA methylation von Dube, Gaurav, Tiamiou, Assia, Bizet, Martin, Boumahd, Yasmine, Gasmi, Imène, Crake, Rebekah, Bellier, Justine, Nokin, Marie-Julie, Calonne, Emilie, Deplus, Rachel, Wissocq, Tom, Peulen, Olivier, Castronovo, Vincent, Fuks, François, Bellahcène, Akeila

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The chromatin remodelling protein LSH/HELLS regulates the amount and distribution of DNA hydroxymethylation in the genome von De Dieuleveult, Maud, Bizet, Martin, Colin, Laurence, Calonne, Emilie, Bachman, Martin, Li, Chao, Stancheva, Irina, Miotto, Benoit, Fuks, François, Deplus, Rachel

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DNA methylation profiling reveals a predominant immune component in breast cancers von Dedeurwaerder, Sarah, Desmedt, Christine, Calonne, Emilie, Singhal, Sandeep K., Haibe‐Kains, Benjamin, Defrance, Matthieu, Michiels, Stefan, Volkmar, Michael, Deplus, Rachel, Luciani, Judith, Lallemand, Françoise, Larsimont, Denis, Toussaint, Jérôme, Haussy, Sandy, Rothé, Françoise, Rouas, Ghizlane, Metzger, Otto, Majjaj, Samira, Saini, Kamal, Putmans, Pascale, Hames, Gérald, van Baren, Nicolas, Coulie, Pierre G., Piccart, Martine, Sotiriou, Christos, Fuks, François

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A multiomics dataset for the study of RNA modifications in human macrophage differentiation and polarisation von Pinello, Natalia, Song, Renhua, Lee, Quintin, Calonne, Emilie, Larance, Mark, Fuks, François, Wong, Justin J. -L.

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The histone demethylase Kdm3a is essential to progression through differentiation von Herzog, Marielle, Josseaux, Eléonore, Dedeurwaerder, Sarah, Calonne, Emilie, Volkmar, Michael, Fuks, François

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Dietary flavanols modulate the transcription of genes associated with cardiovascular pathology without changes in their DNA methylation state von Milenkovic, Dragan, Vanden Berghe, Wim, Boby, Céline, Leroux, Christine, Declerck, Ken, Szarc vel Szic, Katarzyna, Heyninck, Karen, Laukens, Kris, Bizet, Martin, Defrance, Matthieu, Dedeurwaerder, Sarah, Calonne, Emilie, Fuks, Francois, Haegeman, Guy, Haenen, Guido R M M, Bast, Aalt, Weseler, Antje R

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Comprehensive identification of long noncoding RNAs in colorectal cancer von James de Bony, Eric, Bizet, Martin, Van Grembergen, Olivier, Hassabi, Bouchra, Calonne, Emilie, Putmans, Pascale, Bontempi, Gianluca, Fuks, François

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Regulation of DNA Methylation Patterns by CK2-Mediated Phosphorylation of Dnmt3a von Deplus, Rachel, Blanchon, Loïc, Rajavelu, Arumugam, Boukaba, Abdelhalim, Defrance, Matthieu, Luciani, Judith, Rothé, Françoise, Dedeurwaerder, Sarah, Denis, Hélène, Brinkman, Arie B., Simmer, Femke, Müller, Fabian, Bertin, Benjamin, Berdasco, Maria, Putmans, Pascale, Calonne, Emilie, Litchfield, David W., de Launoit, Yvan, Jurkowski, Tomasz P., Stunnenberg, Hendrik G., Bock, Christoph, Sotiriou, Christos, Fraga, Mario F., Esteller, Manel, Jeltsch, Albert, Fuks, François

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DNA methylation profiling identifies epigenetic dysregulation in pancreatic islets from type 2 diabetic patients von Volkmar, Michael, Dedeurwaerder, Sarah, Cunha, Daniel A, Ndlovu, Matladi N, Defrance, Matthieu, Deplus, Rachel, Calonne, Emilie, Volkmar, Ute, Igoillo-Esteve, Mariana, Naamane, Najib, Del Guerra, Silvia, Masini, Matilde, Bugliani, Marco, Marchetti, Piero, Cnop, Miriam, Eizirik, Decio L, Fuks, François

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Aberrant promoter methylation and expression of UTF1 during cervical carcinogenesis von Guenin, Samuel, Mouallif, Mustapha, Deplus, Rachel, Lampe, Xavier, Krusy, Nathalie, Calonne, Emilie, Delbecque, Katty, Kridelka, Frederic, Fuks, François, Ennaji, My Mustapha, Delvenne, Philippe

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Monocytes undergo multi-step differentiation in mice during oral infection by Toxoplasma gondii von Detavernier, Aurélie, Azouz, Abdulkader, Shehade, Hussein, Splittgerber, Marion, Van Maele, Laurye, Nguyen, Muriel, Thomas, Séverine, Achouri, Younes, Svec, David, Calonne, Emilie, Fuks, François, Oldenhove, Guillaume, Goriely, Stanislas

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A comprehensive overview of Infinium HumanMethylation450 data processing von Dedeurwaerder, Sarah, Defrance, Matthieu, Bizet, Martin, Calonne, Emilie, Bontempi, Gianluca, Fuks, François

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