CheckV assesses the quality and completeness of metagenome-assembled viral genomes von Nayfach, Stephen, Camargo, Antonio Pedro, Schulz, Frederik, Eloe-Fadrosh, Emiley, Roux, Simon, Kyrpides, Nikos C.

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Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection von Seshadri, Rekha, Leahy, Sinead C, Attwood, Graeme T, Teh, Koon Hoong, Lambie, Suzanne C, Cookson, Adrian L, Eloe-Fadrosh, Emiley A, Pavlopoulos, Georgios A, Hadjithomas, Michalis, Varghese, Neha J, Paez-Espino, David, Perry, Rechelle, Henderson, Gemma, Creevey, Christopher J, Terrapon, Nicolas, Lapebie, Pascal, Drula, Elodie, Lombard, Vincent, Rubin, Edward, Kyrpides, Nikos C, Henrissat, Bernard, Woyke, Tanja, Ivanova, Natalia N, Kelly, William J

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IMG/VR v4: an expanded database of uncultivated virus genomes within a framework of extensive functional, taxonomic, and ecological metadata von Camargo, Antonio Pedro, Nayfach, Stephen, Chen, I-Min A, Palaniappan, Krishnaveni, Ratner, Anna, Chu, Ken, Ritter, Stephan J, Reddy, T B K, Mukherjee, Supratim, Schulz, Frederik, Call, Lee, Neches, Russell Y, Woyke, Tanja, Ivanova, Natalia N, Eloe-Fadrosh, Emiley A, Kyrpides, Nikos C, Roux, Simon

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The IMG/M data management and analysis system v.7: content updates and new features von Chen, I-Min A, Chu, Ken, Palaniappan, Krishnaveni, Ratner, Anna, Huang, Jinghua, Huntemann, Marcel, Hajek, Patrick, Ritter, Stephan J, Webb, Cody, Wu, Dongying, Varghese, Neha J, Reddy, T B K, Mukherjee, Supratim, Ovchinnikova, Galina, Nolan, Matt, Seshadri, Rekha, Roux, Simon, Visel, Axel, Woyke, Tanja, Eloe-Fadrosh, Emiley A, Kyrpides, Nikos C, Ivanova, Natalia N

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Distribution and abundance of tetraether lipid cyclization genes in terrestrial hot springs reflect pH von Blum, Laura N., Colman, Daniel R., Eloe‐Fadrosh, Emiley A., Kellom, Matthew, Boyd, Eric S., Zhaxybayeva, Olga, Leavitt, William D.

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The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities von Chen, I-Min A, Chu, Ken, Palaniappan, Krishnaveni, Ratner, Anna, Huang, Jinghua, Huntemann, Marcel, Hajek, Patrick, Ritter, Stephan, Varghese, Neha, Seshadri, Rekha, Roux, Simon, Woyke, Tanja, Eloe-Fadrosh, Emiley A, Ivanova, Natalia N, Kyrpides, Nikos C

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Ecological and genomic analyses of candidate phylum WPS‐2 bacteria in an unvegetated soil von Sheremet, Andriy, Jones, Gareth M., Jarett, Jessica, Bowers, Robert M., Bedard, Isaac, Culham, Cassandra, Eloe‐Fadrosh, Emiley A., Ivanova, Natalia, Malmstrom, Rex R., Grasby, Stephen E., Woyke, Tanja, Dunfield, Peter F.

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IMG/VR v.2.0: an integrated data management and analysis system for cultivated and environmental viral genomes von Paez-Espino, David, Roux, Simon, Chen, I-Min A, Palaniappan, Krishna, Ratner, Anna, Chu, Ken, Huntemann, Marcel, Reddy, T B K, Pons, Joan Carles, Llabrés, Mercè, Eloe-Fadrosh, Emiley A, Ivanova, Natalia N, Kyrpides, Nikos C

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IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated viruses von Roux, Simon, Páez-Espino, David, Chen, I-Min A, Palaniappan, Krishna, Ratner, Anna, Chu, Ken, Reddy, T B K, Nayfach, Stephen, Schulz, Frederik, Call, Lee, Neches, Russell Y, Woyke, Tanja, Ivanova, Natalia N, Eloe-Fadrosh, Emiley A, Kyrpides, Nikos C

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Giant virus diversity and host interactions through global metagenomics von Schulz, Frederik, Roux, Simon, Paez-Espino, David, Jungbluth, Sean, Walsh, David A., Denef, Vincent J., McMahon, Katherine D., Konstantinidis, Konstantinos T., Eloe-Fadrosh, Emiley A., Kyrpides, Nikos C., Woyke, Tanja

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Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea von Bowers, Robert M, Kyrpides, Nikos C, Stepanauskas, Ramunas, Harmon-Smith, Miranda, Doud, Devin, Reddy, T B K, Schulz, Frederik, Jarett, Jessica, Rivers, Adam R, Eloe-Fadrosh, Emiley A, Tringe, Susannah G, Ivanova, Natalia N, Copeland, Alex, Clum, Alicia, Becraft, Eric D, Malmstrom, Rex R, Birren, Bruce, Podar, Mircea, Bork, Peer, Weinstock, George M, Garrity, George M, Dodsworth, Jeremy A, Yooseph, Shibu, Sutton, Granger, Glöckner, Frank O, Gilbert, Jack A, Nelson, William C, Hallam, Steven J, Jungbluth, Sean P, Ettema, Thijs J G, Tighe, Scott, Konstantinidis, Konstantinos T, Liu, Wen-Tso, Baker, Brett J, Rattei, Thomas, Eisen, Jonathan A, Hedlund, Brian, McMahon, Katherine D, Fierer, Noah, Knight, Rob, Finn, Rob, Cochrane, Guy, Karsch-Mizrachi, Ilene, Tyson, Gene W, Rinke, Christian, Lapidus, Alla, Meyer, Folker, Yilmaz, Pelin, Parks, Donovan H, Murat Eren, A, Schriml, Lynn, Banfield, Jillian F, Hugenholtz, Philip, Woyke, Tanja

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Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth’s biomes von Roux, Simon, Krupovic, Mart, Daly, Rebecca A., Borges, Adair L., Nayfach, Stephen, Schulz, Frederik, Sharrar, Allison, Matheus Carnevali, Paula B., Cheng, Jan-Fang, Ivanova, Natalia N., Bondy-Denomy, Joseph, Wrighton, Kelly C., Woyke, Tanja, Visel, Axel, Kyrpides, Nikos C., Eloe-Fadrosh, Emiley A.

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Minimum Information about an Uncultivated Virus Genome (MIUViG) von Roux, Simon, Adriaenssens, Evelien M, Dutilh, Bas E, Koonin, Eugene V, Kropinski, Andrew M, Krupovic, Mart, Kuhn, Jens H, Lavigne, Rob, Brister, J Rodney, Varsani, Arvind, Amid, Clara, Aziz, Ramy K, Bordenstein, Seth R, Bork, Peer, Breitbart, Mya, Cochrane, Guy R, Daly, Rebecca A, Desnues, Christelle, Duhaime, Melissa B, Emerson, Joanne B, Enault, François, Fuhrman, Jed A, Hingamp, Pascal, Hugenholtz, Philip, Hurwitz, Bonnie L, Ivanova, Natalia N, Labonté, Jessica M, Lee, Kyung-Bum, Malmstrom, Rex R, Martinez-Garcia, Manuel, Mizrachi, Ilene Karsch, Ogata, Hiroyuki, Páez-Espino, David, Petit, Marie-Agnès, Putonti, Catherine, Rattei, Thomas, Reyes, Alejandro, Rodriguez-Valera, Francisco, Rosario, Karyna, Schriml, Lynn, Schulz, Frederik, Steward, Grieg F, Sullivan, Matthew B, Sunagawa, Shinichi, Suttle, Curtis A, Temperton, Ben, Tringe, Susannah G, Thurber, Rebecca Vega, Webster, Nicole S, Whiteson, Katrine L, Wilhelm, Steven W, Wommack, K Eric, Woyke, Tanja, Wrighton, Kelly C, Yilmaz, Pelin, Yoshida, Takashi, Young, Mark J, Yutin, Natalya, Allen, Lisa Zeigler, Kyrpides, Nikos C, Eloe-Fadrosh, Emiley A

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Spatial, Temporal, and Phylogenetic Scales of Microbial Ecology von Ladau, Joshua, Eloe-Fadrosh, Emiley A.

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Benchmarking viromics: an in silico evaluation of metagenome-enabled estimates of viral community composition and diversity von Roux, Simon, Emerson, Joanne B, Eloe-Fadrosh, Emiley A, Sullivan, Matthew B

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Substrate availability and not thermal acclimation controls microbial temperature sensitivity response to long‐term warming von Domeignoz‐Horta, Luiz A., Pold, Grace, Erb, Hailey, Sebag, David, Verrecchia, Eric, Northen, Trent, Louie, Katherine, Eloe‐Fadrosh, Emiley, Pennacchio, Christa, Knorr, Melissa A., Frey, Serita D., Melillo, Jerry M., DeAngelis, Kristen M.

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The Human Microbiome: From Symbiosis to Pathogenesis von Eloe-Fadrosh, Emiley A, Rasko, David A

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Unexpected host dependency of Antarctic Nanohaloarchaeota von Hamm, Joshua N., Erdmann, Susanne, Eloe-Fadrosh, Emiley A., Angeloni, Allegra, Zhong, Ling, Brownlee, Christopher, Williams, Timothy J., Barton, Kirston, Carswell, Shaun, Smith, Martin A., Brazendale, Sarah, Hancock, Alyce M., Allen, Michelle A., Raftery, Mark J., Cavicchioli, Ricardo

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1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life von Mukherjee, Supratim, Seshadri, Rekha, Varghese, Neha J, Eloe-Fadrosh, Emiley A, Meier-Kolthoff, Jan P, Göker, Markus, Coates, R Cameron, Hadjithomas, Michalis, Pavlopoulos, Georgios A, Paez-Espino, David, Yoshikuni, Yasuo, Visel, Axel, Whitman, William B, Garrity, George M, Eisen, Jonathan A, Hugenholtz, Philip, Pati, Amrita, Ivanova, Natalia N, Woyke, Tanja, Klenk, Hans-Peter, Kyrpides, Nikos C

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Impact of oral typhoid vaccination on the human gut microbiota and correlations with s. Typhi-specific immunological responses von Eloe-Fadrosh, Emiley A, McArthur, Monica A, Seekatz, Anna M, Drabek, Elliott F, Rasko, David A, Sztein, Marcelo B, Fraser, Claire M

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