The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics von Cooper, Laurel, Meier, Austin, Laporte, Marie-Angélique, Elser, Justin L, Mungall, Chris, Sinn, Brandon T, Cavaliere, Dario, Carbon, Seth, Dunn, Nathan A, Smith, Barry, Qu, Botong, Preece, Justin, Zhang, Eugene, Todorovic, Sinisa, Gkoutos, Georgios, Doonan, John H, Stevenson, Dennis W, Arnaud, Elizabeth, Jaiswal, Pankaj

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Plant Reactome: a knowledgebase and resource for comparative pathway analysis von Naithani, Sushma, Gupta, Parul, Preece, Justin, D’Eustachio, Peter, Elser, Justin L, Garg, Priyanka, Dikeman, Daemon A, Kiff, Jason, Cook, Justin, Olson, Andrew, Wei, Sharon, Tello-Ruiz, Marcela K, Mundo, Antonio Fabregat, Munoz-Pomer, Alfonso, Mohammed, Suhaib, Cheng, Tiejun, Bolton, Evan, Papatheodorou, Irene, Stein, Lincoln, Ware, Doreen, Jaiswal, Pankaj

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Plant Reactome: a resource for plant pathways and comparative analysis von Naithani, Sushma, Preece, Justin, D'Eustachio, Peter, Gupta, Parul, Amarasinghe, Vindhya, Dharmawardhana, Palitha D, Wu, Guanming, Fabregat, Antonio, Elser, Justin L, Weiser, Joel, Keays, Maria, Fuentes, Alfonso Munoz-Pomer, Petryszak, Robert, Stein, Lincoln D, Ware, Doreen, Jaiswal, Pankaj

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FragariaCyc: A Metabolic Pathway Database for Woodland Strawberry Fragaria vesca von Naithani, Sushma, Partipilo, Christina M, Raja, Rajani, Elser, Justin L, Jaiswal, Pankaj

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The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics von Cooper, Laurel, Meier, Austin, Laporte, Marie-Angélique, Elser, Justin L., Mungall, Chris, Sinn, Brandon T., Cavaliere, Dario, Carbon, Seth, Dunn, Nathan A., Smith, Barry, Qu, Botong, Preece, Justin, Zhang, Eugene, Todorovic, Sinisa, Gkoutos, Georgios, Doonan, John H., Stevenson, Dennis W., Arnaud, Elizabeth, Jaiswal, Pankaj

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Ensembl Genomes 2022: an expanding genome resource for non-vertebrates von Yates, Andrew D, Allen, James, Amode, Ridwan M, Azov, Andrey G, Barba, Matthieu, Becerra, Andrés, Bhai, Jyothish, Campbell, Lahcen I, Carbajo Martinez, Manuel, Chakiachvili, Marc, Chougule, Kapeel, Christensen, Mikkel, Contreras-Moreira, Bruno, Cuzick, Alayne, Da Rin Fioretto, Luca, Davis, Paul, De Silva, Nishadi H, Diamantakis, Stavros, Dyer, Sarah, Elser, Justin, Filippi, Carla V, Gall, Astrid, Grigoriadis, Dionysios, Guijarro-Clarke, Cristina, Gupta, Parul, Hammond-Kosack, Kim E, Howe, Kevin L, Jaiswal, Pankaj, Kaikala, Vinay, Kumar, Vivek, Kumari, Sunita, Langridge, Nick, Le, Tuan, Luypaert, Manuel, Maslen, Gareth L, Maurel, Thomas, Moore, Benjamin, Muffato, Matthieu, Mushtaq, Aleena, Naamati, Guy, Naithani, Sushma, Olson, Andrew, Parker, Anne, Paulini, Michael, Pedro, Helder, Perry, Emily, Preece, Justin, Quinton-Tulloch, Mark, Rodgers, Faye, Rosello, Marc, Ruffier, Magali, Seager, James, Sitnik, Vasily, Szpak, Michal, Tate, John, Tello-Ruiz, Marcela K, Trevanion, Stephen J, Urban, Martin, Ware, Doreen, Wei, Sharon, Williams, Gary, Winterbottom, Andrea, Zarowiecki, Magdalena, Finn, Robert D, Flicek, Paul

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The Gene Ontology knowledgebase in 2023 von Aleksander, Suzi A, Balhoff, James, Carbon, Seth, Cherry, J Michael, Drabkin, Harold J, Ebert, Dustin, Harris, Nomi L, Moxon, Sierra, Mungall, Christopher J, Sternberg, Paul W, Thomas, Paul D, Quaglia, Federica, Giglio, Michelle, Antonazzo, Giulia, Attrill, Helen, dos Santos, Gil, Tabone, Christopher J, Zhou, Pinglei, Ahmed, Saadullah H, Asanitthong, Praoparn, Erdol, Meltem N, Gage, Matthew C, Ali Kadhum, Mohamed, Li, Kan Yan Chloe, Michalak, Aleksandra, Pritazahra, Armalya, Saverimuttu, Shirin C C, Su, Renzhi, Thurlow, Kate E, Lovering, Ruth C, Logie, Colin, Oliferenko, Snezhana, Blake, Judith, Corbani, Lori, Ni, Li, Sitnikov, Dmitry, Smith, Cynthia, Seager, James, Cooper, Laurel, Jaiswal, Pankaj, Naithani, Sushma, Lera-Ramirez, Manuel, Rutherford, Kim, Wood, Valerie, De Pons, Jeffrey L, Dwinell, Melinda R, Hayman, G Thomas, Kwitek, Anne E, Laulederkind, Stanley J F, Tutaj, Marek A, Vedi, Mahima, Wang, Shur-Jen, D’Eustachio, Peter, Axelsen, Kristian, Aleksander, Suzi A, Engel, Stacia R, Karra, Kalpana, Miyasato, Stuart R, Nash, Robert S, Weng, Shuai, Wong, Edith D, Bakker, Erika, Berardini, Tanya Z, Reiser, Leonore, Auchincloss, Andrea, Argoud-Puy, Ghislaine, Blatter, Marie-Claude, Boutet, Emmanuel, Breuza, Lionel, Casals-Casas, Cristina, Gruaz-Gumowski, Nadine, Hulo, Chantal, Jungo, Florence, Le Mercier, Philippe, Masson, Patrick, Pedruzzi, Ivo, Pourcel, Lucille, Poux, Sylvain, Rivoire, Catherine, Sundaram, Shyamala, Bowler-Barnett, Emily, Denny, Paul, Ignatchenko, Alexandr, Lock, Antonia, Magrane, Michele, Martin, Maria J, Raposo, Pedro, Speretta, Elena, Tyagi, Nidhi, Warner, Kate, Zaru, Rossana, Diehl, Alexander D, Lee, Raymond, Chan, Juancarlos, Zarowiecki, Magdalena, Fisher, Malcolm, Ponferrada, Virgilio, Zorn, Aaron, Ramachandran, Sridhar, Ruzicka, Leyla

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The Gene Ontology resource: enriching a GOld mine von Carbon, Seth, Douglass, Eric, Good, Benjamin M, Unni, Deepak R, Harris, Nomi L, Mungall, Christopher J, Basu, Siddartha, Chisholm, Rex L, Dodson, Robert J, Hartline, Eric, Fey, Petra, Thomas, Paul D, Albou, Laurent-Philippe, Ebert, Dustin, Kesling, Michael J, Mi, Huaiyu, Muruganujan, Anushya, Huang, Xiaosong, Mushayahama, Tremayne, LaBonte, Sandra A, Siegele, Deborah A, Antonazzo, Giulia, Attrill, Helen, Brown, Nick H, Garapati, Phani, Marygold, Steven J, Trovisco, Vitor, dos Santos, Gil, Falls, Kathleen, Tabone, Christopher, Zhou, Pinglei, Goodman, Joshua L, Strelets, Victor B, Thurmond, Jim, Garmiri, Penelope, Ishtiaq, Rizwan, Rodríguez-López, Milagros, Acencio, Marcio L, Kuiper, Martin, Lægreid, Astrid, Logie, Colin, Lovering, Ruth C, Kramarz, Barbara, Saverimuttu, Shirin C C, Pinheiro, Sandra M, Gunn, Heather, Su, Renzhi, Thurlow, Katherine E, Chibucos, Marcus, Giglio, Michelle, Nadendla, Suvarna, Munro, James, Jackson, Rebecca, Duesbury, Margaret J, Del-Toro, Noemi, Meldal, Birgit H M, Paneerselvam, Kalpana, Perfetto, Livia, Porras, Pablo, Orchard, Sandra, Shrivastava, Anjali, Chang, Hsin-Yu, Finn, Robert Daniel, Mitchell, Alexander Lawson, Rawlings, Neil David, Richardson, Lorna, Sangrador-Vegas, Amaia, Blake, Judith A, Christie, Karen R, Dolan, Mary E, Drabkin, Harold J, Hill, David P, Ni, Li, Sitnikov, Dmitry M, Harris, Midori A, Oliver, Stephen G, Rutherford, Kim, Wood, Valerie, Hayles, Jaqueline, Bähler, Jürg, Bolton, Elizabeth R, De Pons, Jeffery L, Dwinell, Melinda R, Hayman, G Thomas, Kaldunski, Mary L, Kwitek, Anne E, Laulederkind, Stanley J F, Plasterer, Cody, Tutaj, Marek A, Vedi, Mahima, Wang, Shur-Jen, D’Eustachio, Peter, Matthews, Lisa, Balhoff, James P, Aleksander, Suzi A, Alexander, Michael J, Cherry, J Michael, Engel, Stacia R, Gondwe, Felix, Karra, Kalpana

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The genome of tolypocladium inflatum: evolution, organization, and expression of the cyclosporin biosynthetic gene cluster von Bushley, Kathryn E, Raja, Rajani, Jaiswal, Pankaj, Cumbie, Jason S, Nonogaki, Mariko, Boyd, Alexander E, Owensby, C Alisha, Knaus, Brian J, Elser, Justin, Miller, Daniel, Di, Yanming, McPhail, Kerry L, Spatafora, Joseph W

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Ontologies as integrative tools for plant science von Walls, Ramona L., Athreya, Balaji, Cooper, Laurel, Elser, Justin, Gandolfo, Maria A., Jaiswal, Pankaj, Mungall, Christopher J., Preece, Justin, Rensing, Stefan, Smith, Barry, Stevenson, Dennis W.

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The Plant Ontology Facilitates Comparisons of Plant Development Stages Across Species von Walls, Ramona L, Cooper, Laurel, Elser, Justin, Gandolfo, Maria Alejandra, Mungall, Christopher J, Smith, Barry, Stevenson, Dennis W, Jaiswal, Pankaj

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Using knowledge graphs to infer gene expression in plants von Thessen, Anne E, Cooper, Laurel, Swetnam, Tyson L, Hegde, Harshad, Reese, Justin, Elser, Justin, Jaiswal, Pankaj

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The genome of woodland strawberry (Fragaria vesca) von Shulaev, Vladimir, Sargent, Daniel J, Crowhurst, Ross N, Mockler, Todd C, Folkerts, Otto, Delcher, Arthur L, Jaiswal, Pankaj, Mockaitis, Keithanne, Liston, Aaron, Mane, Shrinivasrao P, Burns, Paul, Davis, Thomas M, Slovin, Janet P, Bassil, Nahla, Hellens, Roger P, Evans, Clive, Harkins, Tim, Kodira, Chinnappa, Desany, Brian, Crasta, Oswald R, Jensen, Roderick V, Allan, Andrew C, Michael, Todd P, Setubal, Joao Carlos, Celton, Jean-Marc, Rees, D Jasper G, Williams, Kelly P, Holt, Sarah H, Rojas, Juan Jairo Ruiz, Chatterjee, Mithu, Liu, Bo, Silva, Herman, Meisel, Lee, Adato, Avital, Filichkin, Sergei A, Troggio, Michela, Viola, Roberto, Ashman, Tia-Lynn, Wang, Hao, Dharmawardhana, Palitha, Elser, Justin, Raja, Rajani, Priest, Henry D, Bryant, Douglas W, Fox, Samuel E, Givan, Scott A, Wilhelm, Larry J, Naithani, Sushma, Christoffels, Alan, Salama, David Y, Carter, Jade, Girona, Elena Lopez, Zdepski, Anna, Wang, Wenqin, Kerstetter, Randall A, Schwab, Wilfried, Korban, Schuyler S, Davik, Jahn, Monfort, Amparo, Denoyes-Rothan, Beatrice, Arus, Pere, Mittler, Ron, Flinn, Barry, Aharoni, Asaph, Bennetzen, Jeffrey L, Salzberg, Steven L, Dickerman, Allan W, Velasco, Riccardo, Borodovsky, Mark, Veilleux, Richard E, Folta, Kevin M

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plant ontology as a tool for comparative plant anatomy and genomic analyses von Cooper, Laurel, Walls, Ramona L, Elser, Justin, Gandolfo, Maria A, Stevenson, Dennis W, Smith, Barry, Preece, Justin, Athreya, Balaji, Mungall, Christopher J, Rensing, Stefan, Hiss, Manuel, Lang, Daniel, Reski, Ralf, Berardini, Tanya Z, Li, Dongjui, Huala, Eva, Schaeffer, Mary, Menda, Naama, Arnaud, Elizabeth, Shrestha, Rosemary, Yamazaki, Yukiko, Jaiswal, Pankaj

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Data sharing and ontology use among agricultural genetics, genomics, and breeding databases and resources of the Agbiodata Consortium von Clarke, Jennifer L, Cooper, Laurel D, Poelchau, Monica F, Berardini, Tanya Z, Elser, Justin, Farmer, Andrew D, Ficklin, Stephen, Kumari, Sunita, Laporte, Marie-Angélique, Nelson, Rex T, Sadohara, Rie, Selby, Peter, Thessen, Anne E, Whitehead, Brandon, Sen, Taner Z

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The Genome of Tolypocladium inflatum: Evolution, Organization, and Expression of the Cyclosporin Biosynthetic Gene Cluster: e1003496 von Bushley, Kathryn E, Raja, Rajani, Jaiswal, Pankaj, Cumbie, Jason S, Nonogaki, Mariko, Boyd, Alexander E, Owensby, C Alisha, Knaus, Brian J, Elser, Justin, Miller, Daniel, Di, Yanming, McPhail, Kerry L, Spatafora, Joseph W

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Data sharing and ontology use among agricultural genetics, genomics, and breeding databases and resources of the AgBioData Consortium von Clarke, Jennifer L, Cooper, Laurel D, Poelchau, Monica F, Berardini, Tanya Z, Elser, Justin, Farmer, Andrew D, Ficklin, Stephen, Kumari, Sunita, Laporte, Marie-Angélique, Nelson, Rex T, Sadohara, Rie, Selby, Peter, Thessen, Anne E, Whitehead, Brandon, Sen, Taner Z

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The Gene Ontology knowledgebase in 2023 von Gene Ontology Consortium, Aleksander, Suzi A, Balhoff, James, Carbon, Seth, Cherry, J Michael, Drabkin, Harold J, Feuermann, Marc, Gaudet, Pascale, Harris, Nomi L, Mi, Huaiyu, Moxon, Sierra, Mungall, Christopher J, Muruganugan, Anushya, Mushayahama, Tremayne, Thomas, Paul D, Siegele, Deborah A, Chisholm, Rex L, Fey, Petra, Aspromonte, Maria Cristina, Quaglia, Federica, Attrill, Helen, Marygold, Steven, Tabone, Christopher J, Thurmond, Jim, Zhou, Pinglei, Luna Buitrago, Diana, Erdol, Meltem N, Gage, Matthew C, Ali Kadhum, Mohamed, Li, Kan Yan Chloe, Long, Miao, Michalak, Aleksandra, Pesala, Angeline, Pritazahra, Armalya, Saverimuttu, Shirin CC, Oliferenko, Snezhana, Blake, Judith, Christie, Karen, Corbani, Lori, Dolan, Mary E, Ni, Li, Smith, Cynthia, Seager, James, Cooper, Laurel, Elser, Justin, Lera-Ramirez, Manuel, Wood, Valerie, De Pons, Jeffrey L, Dwinell, Melinda R, Hayman, G Thomas, Kaldunski, Mary L, Tutaj, Marek A, Vedi, Mahima, D'Eustachio, Peter, Aimo, Lucila, Axelsen, Kristian, Bridge, Alan, Hyka-Nouspikel, Nevila, Morgat, Anne, Engel, Stacia R, Miyasato, Stuart R, Skrzypek, Marek S, Weng, Shuai, Wong, Edith D, Bakker, Erika, Reiser, Leonore, Argoud-Puy, Ghislaine, Blatter, Marie-Claude, Boutet, Emmanuel, Breuza, Lionel, Coudert, Elisabeth, Livia Famiglietti, Maria, Gos, Arnaud, Gruaz-Gumowski, Nadine, Le Mercier, Philippe, Lieberherr, Damien, Pourcel, Lucille, Poux, Sylvain, Sundaram, Shyamala, Bowler-Barnett, Emily, Bye-A-Jee, Hema, Ignatchenko, Alexandr, Ishtiaq, Rizwan, Lock, Antonia, Lussi, Yvonne, Orchard, Sandra, Speretta, Elena, Tyagi, Nidhi, Warner, Kate, Diehl, Alexander D, Chan, Juancarlos, Diamantakis, Stavros, Zarowiecki, Magdalena, Fisher, Malcolm, James-Zorn, Christina, Ponferrada, Virgilio, Zorn, Aaron, Ramachandran, Sridhar, Ruzicka, Leyla, Westerfield, Monte

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The Gene Ontology knowledgebase in 2023 von Aleksander, Suzi A, Balhoff, James, Carbon, Seth, Cherry, J Michael, Drabkin, Harold J, Feuermann, Marc, Gaudet, Pascale, Harris, Nomi L, Mi, Huaiyu, Moxon, Sierra, Mungall, Christopher J, Muruganugan, Anushya, Mushayahama, Tremayne, Thomas, Paul D, Siegele, Deborah A, Chisholm, Rex L, Fey, Petra, Aspromonte, Maria Cristina, Quaglia, Federica, Attrill, Helen, Marygold, Steven, Tabone, Christopher J, Thurmond, Jim, Zhou, Pinglei, Luna Buitrago, Diana, Erdol, Meltem N, Gage, Matthew C, Ali Kadhum, Mohamed, Li, Kan Yan Chloe, Long, Miao, Michalak, Aleksandra, Pesala, Angeline, Pritazahra, Armalya, Saverimuttu, Shirin CC, Logie, Colin, Oliferenko, Snezhana, Blake, Judith, Christie, Karen, Corbani, Lori, Dolan, Mary E, Ni, Li, Smith, Cynthia, Seager, James, Cooper, Laurel, Elser, Justin, Lera-Ramirez, Manuel, Wood, Valerie, De Pons, Jeffrey L, Dwinell, Melinda R, Hayman, G Thomas, Kaldunski, Mary L, Tutaj, Marek A, Vedi, Mahima, D'Eustachio, Peter, Aimo, Lucila, Axelsen, Kristian, Bridge, Alan, Hyka-Nouspikel, Nevila, Morgat, Anne, Engel, Stacia R, Miyasato, Stuart R, Skrzypek, Marek S, Weng, Shuai, Wong, Edith D, Bakker, Erika, Reiser, Leonore, Argoud-Puy, Ghislaine, Blatter, Marie-Claude, Boutet, Emmanuel, Breuza, Lionel, Coudert, Elisabeth, Livia Famiglietti, Maria, Gos, Arnaud, Gruaz-Gumowski, Nadine, Le Mercier, Philippe, Lieberherr, Damien, Pourcel, Lucille, Poux, Sylvain, Sundaram, Shyamala, Bowler-Barnett, Emily, Bye-A-Jee, Hema, Ignatchenko, Alexandr, Ishtiaq, Rizwan, Lock, Antonia, Lussi, Yvonne, Orchard, Sandra, Speretta, Elena, Tyagi, Nidhi, Warner, Kate, Diehl, Alexander D, Chan, Juancarlos, Diamantakis, Stavros, Zarowiecki, Magdalena, Fisher, Malcolm, James-Zorn, Christina, Ponferrada, Virgilio, Zorn, Aaron, Ramachandran, Sridhar, Ruzicka, Leyla, Westerfield, Monte

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The genome of woodland strawberry (Fragaria vesca) von Shulaev, Vladimir, Sargent, Daniel J, Crowhurst, Ross N, Mockler, Todd C, Folkerts, Otto, Delcher, Arthur L, Jaiswal, Pankaj, Mockaitis, Keithanne, Liston, Aaron, Mane, Shrinivasrao P, Burns, Paul, Davis, Thomas M, Slovin, Janet P, Bassil, Nahla, Hellens, Roger P, Evans, Clive, Harkins, Tim, Kodira, Chinnappa, Desany, Brian, Crasta, Oswald R, Jensen, Roderick V, Allan, Andrew C, Michael, Todd P, Setubal, Joao Carlos, Celton, Jean-Marc, Rees, D. Jasper G, Williams, Kelly P, Holt, Sarah H, Rojas, Juan Jairo, Chatterjee, Mithu, Liu, Bo, Silva, Herman, Meisel, Lee, Adato, Avital, Filichkin, Sergei A, Troggio, Michela, Viola, Roberto, Ashman, Tia-Lynn, Wang, Hao, Dharmawardhana, Palitha, Elser, Justin, Raja, Rajani, Priest, Henry D, Bryant, Douglas W, Fox, Samuel E, Givan, Scott A, Wilhelm, Larry J, Naithani, Sushma, Christoffels, Alan, Salama, David Y, Carter, Jade, Girona, Elena L, Zdepski, Anna, Wang, Wenqin, Kerstetter, Randall A, Schwab, Wilfried, Korban, Schuyler S, Davik, Jahn, Monfort Vives, Amparo, Denoyes-Rothan, Beatrice, Arús i Gorina, Pere, Mittler, Ron, Flinn, Barry, Aharoni, Asaph, Bennetzen, Jeffrey L, Salzberg, Steven L, Dickerman, Allan W, Velasco, Riccardo, Borodovsky, Mark, Veilleux, Richard E, Folta, Kevin M

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