Concomitant Notch activation and p53 deletion trigger epithelial-to-mesenchymal transition and metastasis in mouse gut von Chanrion, Maia, Kuperstein, Inna, Barrière, Cédric, El Marjou, Fatima, Cohen, David, Vignjevic, Danijela, Stimmer, Lev, Paul-Gilloteaux, Perrine, Bièche, Ivan, Tavares, Silvina Dos Reis, Boccia, Giuseppe-Fulvio, Cacheux, Wulfran, Meseure, Didier, Fre, Silvia, Martignetti, Loredana, Legoix-Né, Patricia, Girard, Elodie, Fetler, Luc, Barillot, Emmanuel, Louvard, Daniel, Zinovyev, Andreï, Robine, Sylvie

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biogitflow: development workflow protocols for bioinformatics pipelines with git and GitLab [version 3; peer review: 2 approved] von Kamoun, Choumouss, Roméjon, Julien, de Soyres, Henri, Gallois, Apolline, Girard, Elodie, Hupé, Philippe

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Tumor mutational burden assessment and standardized bioinformatics approach using custom NGS panels in clinical routine von Dupain, Célia, Gutman, Tom, Girard, Elodie, Kamoun, Choumouss, Marret, Grégoire, Castel-Ajgal, Zahra, Sablin, Marie-Paule, Neuzillet, Cindy, Borcoman, Edith, Hescot, Ségolène, Callens, Céline, Trabelsi-Grati, Olfa, Melaabi, Samia, Vibert, Roseline, Antonio, Samantha, Franck, Coralie, Galut, Michèle, Guillou, Isabelle, Halladjian, Maral, Allory, Yves, Cyrta, Joanna, Romejon, Julien, Frouin, Eleonore, Stoppa-Lyonnet, Dominique, Wong, Jennifer, Le Tourneau, Christophe, Bièche, Ivan, Servant, Nicolas, Kamal, Maud, Masliah-Planchon, Julien

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Multimodal liquid biopsy for early monitoring and outcome prediction of chemotherapy in metastatic breast cancer von Bortolini Silveira, Amanda, Bidard, François-Clément, Tanguy, Marie-Laure, Girard, Elodie, Trédan, Olivier, Dubot, Coraline, Jacot, William, Goncalves, Anthony, Debled, Marc, Levy, Christelle, Ferrero, Jean-Marc, Jouannaud, Christelle, Rios, Maria, Mouret-Reynier, Marie-Ange, Dalenc, Florence, Hego, Caroline, Rampanou, Aurore, Albaud, Benoit, Baulande, Sylvain, Berger, Frédérique, Lemonnier, Jérôme, Renault, Shufang, Desmoulins, Isabelle, Proudhon, Charlotte, Pierga, Jean-Yves

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Identification of a large intra-exonic deletion in BRCA2 exon 18 in a pancreatic ductal adenocarcinoma von Debbabi, Inès, Vacher, Sophie, Neuzillet, Cindy, Cros, Jérome, Revillon, Françoise, Petitalot, Ambre, Turpin, Anthony, Antonio, Samantha, Girard, Elodie, Dupain, Célia, Kamal, Maud, Hammel, Pascal, Bièche, Ivan, Masliah-Planchon, Julien, Caputo, Sandrine M.

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Evaluation of the association of heterozygous germline variants in NTHL1 with breast cancer predisposition: an international multi-center study of 47,180 subjects von Li, Na, Zethoven, Magnus, McInerny, Simone, Devereux, Lisa, Huang, Yu-Kuan, Thio, Niko, Cheasley, Dane, Gutiérrez-Enríquez, Sara, Moles-Fernández, Alejandro, Diez, Orland, Nguyen-Dumont, Tu, Southey, Melissa C., Hopper, John L., Simard, Jacques, Dumont, Martine, Soucy, Penny, Meindl, Alfons, Schmutzler, Rita, Schmidt, Marjanka K., Adank, Muriel A., Andrulis, Irene L., Hahnen, Eric, Engel, Christoph, Lesueur, Fabienne, Girard, Elodie, Neuhausen, Susan L., Ziv, Elad, Allen, Jamie, Easton, Douglas F., Scott, Rodney J., Gorringe, Kylie L., James, Paul A., Campbell, Ian G.

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A meiotic XPF-ERCC1-like complex recognizes joint molecule recombination intermediates to promote crossover formation von De Muyt, Arnaud, Pyatnitskaya, Alexandra, Andréani, Jessica, Ranjha, Lepakshi, Ramus, Claire, Laureau, Raphaëlle, Fernandez-Vega, Ambra, Holoch, Daniel, Girard, Elodie, Govin, Jérome, Margueron, Raphaël, Couté, Yohann, Cejka, Petr, Guérois, Raphaël, Borde, Valérie

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Genetic markers and phosphoprotein forms of beta-catenin pβ-Cat552 and pβ-Cat675 are prognostic biomarkers of cervical cancer von Scholl, Suzy M, Beal, Jonas, de Koning, Leanne, Girard, Elodie, Popovic, Marina, de la Rochefordière, Anne, Lecuru, Fabrice, Fourchotte, Virginie, Ngo, Charlotte, Floquet, Anne, Berns, Els MJJ, Kenter, Gemma, Gestraud, Pierre, von der Leyen, Heiko, Lecerf, Charlotte, Puard, Vincent, Roman, Sergio Roman, Latouche, Aurelien, Kereszt, Attila, Balint, Balazs, Rouzier, Roman, Kamal, Maud

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Pathogenic alterations in PIK3CA and KMT2C are frequent and independent prognostic factors in anal squamous cell carcinoma treated with salvage abdominoperineal resection von Hamza, Abderaouf, Masliah‐Planchon, Julien, Neuzillet, Cindy, Lefèvre, Jérémie H., Svrcek, Magali, Vacher, Sophie, Bourneix, Christine, Delaye, Matthieu, Goéré, Diane, Dartigues, Peggy, Samalin, Emmanuelle, Hilmi, Marc, Lazartigues, Julien, Girard, Elodie, Emile, Jean‐François, Rigault, Eugénie, Dangles‐Marie, Virginie, Rioux‐Leclercq, Nathalie, Fouchardière, Christelle, Tougeron, David, Casadei‐Gardini, Andrea, Mariani, Pascale, Peschaud, Frédérique, Cacheux, Wulfran, Lièvre, Astrid, Bièche, Ivan

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SHH medulloblastoma in a young adult with a TCF4 germline pathogenic variation von Blanluet, Maud, Masliah-Planchon, Julien, Giurgea, Irina, Bielle, Franck, Girard, Elodie, Andrianteranagna, Mamy, Clemenceau, Stéphane, Bourneix, Christine, Burglen, Lydie, Doummar, Diane, Rapinat, Audrey, Oumoussa, Badreddine Mohand, Ayrault, Olivier, Pouponnot, Celio, Gentien, David, Pierron, Gaëlle, Delattre, Olivier, Doz, François, Bourdeaut, Franck

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Robust methylation‐based classification of brain tumours using nanopore sequencing von Kuschel, Luis P., Hench, Jürgen, Frank, Stephan, Hench, Ivana Bratic, Girard, Elodie, Blanluet, Maud, Masliah‐Planchon, Julien, Misch, Martin, Onken, Julia, Czabanka, Marcus, Yuan, Dongsheng, Lukassen, Sören, Karau, Philipp, Ishaque, Naveed, Hain, Elisabeth G., Heppner, Frank, Idbaih, Ahmed, Behr, Nikolaus, Harms, Christoph, Capper, David, Euskirchen, Philipp

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Molecular characterisation of tumours of the lacrimal apparatus von Vibert, Roseline, Cyrta, Joanna, Girard, Elodie, Vacher, Sophie, Dupain, Célia, Antonio, Samantha, Wong, Jennifer, Baulande, Sylvain, De Sousa, Juliana Monteiro Ferras, Vincent‐Salomon, Anne, Masliah‐Planchon, Julien, Girard, Nicolas, Le Tourneau, Christophe, Kamal, Maud, Bièche, Ivan

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Etat des connaissances sur le trouble de stress post-traumatique du postpartum von Benzakour, Lamyae, Epiney, Manuella, Girard, Elodie

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High rate of PIK3CA mutations but no TP53 mutations in low‐grade adenosquamous carcinoma of the breast von Bataillon, Guillaume, Fuhrmann, Laetitia, Girard, Elodie, Menet, Emanuelle, Laé, Marick, Capovilla, Mathieu, Treilleux, Isabelle, Arnould, Laurent, Penault‐Llorca, Frederique, Rouzier, Roman, Marchiò, Caterina, Bieche, Ivan, Vincent‐Salomon, Anne

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Abstract 4330: HPV double capture NGS method in cervical cancer: Identification of MACROD2 gene as HPV hot spot integration site and viral load status as a prognostic factor von Kamal, Maud, Lameiras, Sonia, Morel, Adeline, Lecerf, Charlotte, Vacher, Sophie, Dupain, Celia, Jeannot, Emmanuelle, Deloger, Marc, Servant, Nicolas, Girard, Elodie, Baulande, Sylvain, Kenter, Gemma, Jordanova, Ekaterina, Berns, Els, Rouzier, Roman, Cacheux, Wulfran, Le Tourneau, Christophe, Nicolas, Alain, Scholl, Suzy, Bieche, Ivan

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MDB-12. NANOPORE SEQUENCING AS A CUTTING-EDGE TECHNOLOGY FOR MEDULLOBLASTOMA CLASSIFICATION von Filser, Mathilde, Torrejon, Jacob, Merchadou, Kevin, Girard, Elodie, Bourneix, Christine, Lemaître, Elisa, Brillet, Riwan, Wong, Jennifer, Gentien, David, Rapinat, Audrey, Servant, Nicolas, Vasiljevic, Alexandre, Bertozzi, Anne-Isabelle, Raimbault, Sandra, Tauziède-Espariat, Arnault, Lhermitte, Benoit, Faure-Conter, Cécile, Icher, Céline, Berger, Claire, Maurage, Claude-Alain, Bodet, Damien, Meyronet, David, Uro-Coste, Emmanuelle, De Carli, Emilie, Forest, Fabien, Palenzuela, Gilles, Chotard, Guillaume, Gauchotte, Guillaume, Sudour, Hélène, Mansuy, Ludovic, Deparis, Mariana, Machet, Marie-Christine, Faisant, Maxime, Entz-Werle, Natacha, Varlet, Pascale, Leblond, Pierre, Michalak-Provost, Sophie, Houdemont, Stéphanie Proust, Rigau, Valérie, Doz, François, Bourdeaut, Franck, Delattre, Olivier, Ayrault, Olivier, Masliah-Planchon, Julien

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Abstract 3390: Predictive and prognostic value of circulating tumor DNA (ctDNA) compared to circulating tumor cells (CTC) in a prospective cohort of metastatic breast cancer patien... von Pierga, Jean-Yves, Silveira, Amanda, Girard, Elodie, Lorgis, Veronique, Tanguy, Marie-Laure, Albaud, Benoit, Tredan, Olivier, Dubot, Coraline, Hego, Caroline, Jacot, William, Goncalves, Anthony, Debled, Marc, Levy, Christelle, Ferrero, Jean-Marc, Jouannaud, Christelle, Mouret-Reynier, Marie-Ange, Dalenc, Florence, Baulande, Sylvain, Lemonnier, Jerome, Berger, Frederique, Bidard, Francois-Clement, Proudhon, Charlotte

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Morphology and genomic hallmarks of breast tumours developed by ATM deleterious variant carriers von Renault, Anne-Laure, Mebirouk, Noura, Fuhrmann, Laetitia, Bataillon, Guillaume, Cavaciuti, Eve, Le Gal, Dorothée, Girard, Elodie, Popova, Tatiana, La Rosa, Philippe, Beauvallet, Juana, Eon-Marchais, Séverine, Dondon, Marie-Gabrielle, d'Enghien, Catherine Dubois, Laugé, Anthony, Chemlali, Walid, Raynal, Virginie, Labbé, Martine, Bièche, Ivan, Baulande, Sylvain, Bay, Jacques-Olivier, Berthet, Pascaline, Caron, Olivier, Buecher, Bruno, Faivre, Laurence, Fresnay, Marc, Gauthier-Villars, Marion, Gesta, Paul, Janin, Nicolas, Lejeune, Sophie, Maugard, Christine, Moutton, Sébastien, Venat-Bouvet, Laurence, Zattara, Hélène, Fricker, Jean-Pierre, Gladieff, Laurence, Coupier, Isabelle, Chenevix-Trench, Georgia, Hall, Janet, Vincent-Salomon, Anne, Stoppa-Lyonnet, Dominique, Andrieu, Nadine, Lesueur, Fabienne

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biogitflow: development workflow protocols for bioinformatics pipelines with git and GitLab [version 1; peer review: 1 approved with reservations] von Kamoun, Choumouss, Roméjon, Julien, de Soyres, Henri, Gallois, Apolline, Girard, Elodie, Hupé, Philippe

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biogitflow: development workflow protocols for bioinformatics pipelines with git and GitLab [version 2; peer review: 1 approved, 1 approved with reservations] von Kamoun, Choumouss, Roméjon, Julien, de Soyres, Henri, Gallois, Apolline, Girard, Elodie, Hupé, Philippe

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