DGIdb: mining the druggable genome von Griffith, Malachi, Griffith, Obi L, Coffman, Adam C, Weible, James V, McMichael, Josh F, Spies, Nicholas C, Koval, James, Das, Indraniel, Callaway, Matthew B, Eldred, James M, Miller, Christopher A, Subramanian, Janakiraman, Govindan, Ramaswamy, Kumar, Runjun D, Bose, Ron, Ding, Li, Walker, Jason R, Larson, David E, Dooling, David J, Smith, Scott M, Ley, Timothy J, Mardis, Elaine R, Wilson, Richard K

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DGIdb 2.0: mining clinically relevant drug-gene interactions von Wagner, Alex H, Coffman, Adam C, Ainscough, Benjamin J, Spies, Nicholas C, Skidmore, Zachary L, Campbell, Katie M, Krysiak, Kilannin, Pan, Deng, McMichael, Joshua F, Eldred, James M, Walker, Jason R, Wilson, Richard K, Mardis, Elaine R, Griffith, Malachi, Griffith, Obi L

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svtools: population-scale analysis of structural variation von Larson, David E, Abel, Haley J, Chiang, Colby, Badve, Abhijit, Das, Indraniel, Eldred, James M, Layer, Ryan M, Hall, Ira M

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CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer von Griffith, Malachi, Spies, Nicholas C, Krysiak, Kilannin, McMichael, Joshua F, Coffman, Adam C, Danos, Arpad M, Ainscough, Benjamin J, Ramirez, Cody A, Rieke, Damian T, Kujan, Lynzey, Barnell, Erica K, Wagner, Alex H, Skidmore, Zachary L, Wollam, Amber, Liu, Connor J, Jones, Martin R, Bilski, Rachel L, Lesurf, Robert, Feng, Yan-Yang, Shah, Nakul M, Bonakdar, Melika, Trani, Lee, Matlock, Matthew, Ramu, Avinash, Campbell, Katie M, Spies, Gregory C, Graubert, Aaron P, Gangavarapu, Karthik, Eldred, James M, Larson, David E, Walker, Jason R, Good, Benjamin M, Wu, Chunlei, Su, Andrew I, Dienstmann, Rodrigo, Margolin, Adam A, Tamborero, David, Lopez-Bigas, Nuria, Jones, Steven J M, Bose, Ron, Spencer, David H, Wartman, Lukas D, Wilson, Richard K, Mardis, Elaine R, Griffith, Obi L

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Patterns and functional implications of rare germline variants across 12 cancer types von Lu, Charles, Xie, Mingchao, Wendl, Michael C., Wang, Jiayin, McLellan, Michael D., Leiserson, Mark D. M., Huang, Kuan-lin, Wyczalkowski, Matthew A., Jayasinghe, Reyka, Banerjee, Tapahsama, Ning, Jie, Tripathi, Piyush, Zhang, Qunyuan, Niu, Beifang, Ye, Kai, Schmidt, Heather K., Fulton, Robert S., McMichael, Joshua F., Batra, Prag, Kandoth, Cyriac, Bharadwaj, Maheetha, Koboldt, Daniel C., Miller, Christopher A., Kanchi, Krishna L., Eldred, James M., Larson, David E., Welch, John S., You, Ming, Ozenberger, Bradley A., Govindan, Ramaswamy, Walter, Matthew J., Ellis, Matthew J., Mardis, Elaine R., Graubert, Timothy A., Dipersio, John F., Ley, Timothy J., Wilson, Richard K., Goodfellow, Paul J., Raphael, Benjamin J., Chen, Feng, Johnson, Kimberly J., Parvin, Jeffrey D., Ding, Li

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Genome Modeling System: A Knowledge Management Platform for Genomics von Griffith, Malachi, Griffith, Obi L, Smith, Scott M, Ramu, Avinash, Callaway, Matthew B, Brummett, Anthony M, Kiwala, Michael J, Coffman, Adam C, Regier, Allison A, Oberkfell, Ben J, Sanderson, Gabriel E, Mooney, Thomas P, Nutter, Nathaniel G, Belter, Edward A, Du, Feiyu, Long, Robert L, Abbott, Travis E, Ferguson, Ian T, Morton, David L, Burnett, Mark M, Weible, James V, Peck, Joshua B, Dukes, Adam, McMichael, Joshua F, Lolofie, Justin T, Derickson, Brian R, Hundal, Jasreet, Skidmore, Zachary L, Ainscough, Benjamin J, Dees, Nathan D, Schierding, William S, Kandoth, Cyriac, Kim, Kyung H, Lu, Charles, Harris, Christopher C, Maher, Nicole, Maher, Christopher A, Magrini, Vincent J, Abbott, Benjamin S, Chen, Ken, Clark, Eric, Das, Indraniel, Fan, Xian, Hawkins, Amy E, Hepler, Todd G, Wylie, Todd N, Leonard, Shawn M, Schroeder, William E, Shi, Xiaoqi, Carmichael, Lynn K, Weil, Matthew R, Wohlstadter, Richard W, Stiehr, Gary, McLellan, Michael D, Pohl, Craig S, Miller, Christopher A, Koboldt, Daniel C, Walker, Jason R, Eldred, James M, Larson, David E, Dooling, David J, Ding, Li, Mardis, Elaine R, Wilson, Richard K

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Comprehensive genomic analysis reveals FLT3 activation and a therapeutic strategy for a patient with relapsed adult B-lymphoblastic leukemia von Griffith, Malachi, Griffith, Obi L, Krysiak, Kilannin, Skidmore, Zachary L, Christopher, Matthew J, Klco, Jeffery M, Ramu, Avinash, Lamprecht, Tamara L, Wagner, Alex H, Campbell, Katie M, Lesurf, Robert, Hundal, Jasreet, Zhang, Jin, Spies, Nicholas C, Ainscough, Benjamin J, Larson, David E, Heath, Sharon E, Fronick, Catrina, O'Laughlin, Shelly, Fulton, Robert, Magrini, Vincent, McGrath, Sean, Smith, Scott M, Miller, Christopher A, Maher, Christopher A, Payton, Jacqueline E, Walker, Jason R, Eldred, James M, Walter, Matthew J, Link, Daniel C, Graubert, Timothy A, Westervelt, Peter, Kulkarni, Shashikant, DiPersio, John F, Mardis, Elaine R, Wilson, Richard K, Ley, Timothy J

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Abstract PR01: Identifying clinically important somatic mutations through a knowledge-based approach von Ainscough, Benjamin J., Griffith, Malachi, Kunisaki, Jason, Coffman, Adam, McMichael, Joshua F., Eldred, James M., Walker, Jason R., Fulton, Robert S., Wilson, Richard K., Griffith, Obi L., Mardis, Elaine R.

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Abstract A2-42: Identifying clinically important somatic mutations through a knowledge-based approach von Ainscough, Benjamin J., Griffith, Malachi, Kunisaki, Jason, Coffman, Adam, McMichael, Joshua F., Eldred, James M., Walker, Jason R., Fulton, Robert S., Wilson, Richard K., Griffith, Obi L., Mardis, Elaine R.

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Genome Modeling System: A Knowledge Management Platform for Genomics: e1004274 von Griffith, Malachi, Griffith, Obi L, Smith, Scott M, Ramu, Avinash, Callaway, Matthew B, Brummett, Anthony M, Kiwala, Michael J, Coffman, Adam C, Regier, Allison A, Oberkfell, Ben J, Sanderson, Gabriel E, Mooney, Thomas P, Nutter, Nathaniel G, Belter, Edward A, Du, Feiyu, Long, Robert L, Abbott, Travis E, Ferguson, Ian T, Morton, David L, Burnett, Mark M, Weible, James V, Peck, Joshua B, Dukes, Adam, McMichael, Joshua F, Lolofie, Justin T, Derickson, Brian R, Hundal, Jasreet, Skidmore, Zachary L, Ainscough, Benjamin J, Dees, Nathan D, Schierding, William S, Kandoth, Cyriac, Kim, Kyung H, Lu, Charles, Harris, Christopher C, Maher, Nicole, Maher, Christopher A, Magrini, Vincent J, Abbott, Benjamin S, Chen, Ken, Clark, Eric, Das, Indraniel, Fan, Xian, Hawkins, Amy E, Hepler, Todd G, Wylie, Todd N, Leonard, Shawn M, Schroeder, William E, Shi, Xiaoqi, Carmichael, Lynn K, Weil, Matthew R, Wohlstadter, Richard W, Stiehr, Gary, McLellan, Michael D, Pohl, Craig S, Miller, Christopher A, Koboldt, Daniel C, Walker, Jason R, Eldred, James M, Larson, David E, Dooling, David J, Ding, Li, Mardis, Elaine R, Wilson, Richard K

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Thyroid hormone signaling specifies cone subtypes in human retinal organoids von Eldred, Kiara C, Hadyniak, Sarah E, Hussey, Katarzyna A, Brenerman, Boris, Zhang, Ping-Wu, Chamling, Xitiz, Sluch, Valentin M, Welsbie, Derek S, Hattar, Samer, Taylor, James, Wahlin, Karl, Zack, Donald J, Johnston, Jr, Robert J

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The role of transient surface morphology on composition control in AlGaN layers and wells von Houston Dycus, J., Washiyama, Shun, Eldred, Tim B., Guan, Yan, Kirste, Ronny, Mita, Seiji, Sitar, Zlatko, Collazo, Ramon, LeBeau, James M.

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Observing relaxation in device quality InGaN templates by TEM techniques von Eldred, Tim B., Abdelhamid, Mostafa, Reynolds, J. G., El-Masry, N. A., LeBeau, James M., Bedair, S. M.

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The Cancer Genome Atlas Pan-Cancer analysis project von Weinstein, John N, Collisson, Eric A, Mills, Gordon B, Shaw, Kenna R Mills, Ozenberger, Brad A, Ellrott, Kyle, Shmulevich, Ilya, Sander, Chris, Stuart, Joshua M

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Expanding the Dimensions of a High Dynamic Range Detector with a Limited Number of Pixels via Scripting von Chen, Xi, Eldred, Tim B., Abdelhamid, Mostafa, LeBeau, James M.

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High-Capacity and Rapid Removal of Refractory NOM Using Nanoscale Anion Exchange Resin von Johnson, Billy R, Eldred, Tim B, Nguyen, Andy T, Payne, William M, Schmidt, Emily E, Alansari, Amir Y, Amburgey, James E, Poler, Jordan C

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Viral discovery and sequence recovery using DNA microarrays von Wang, David, Urisman, Anatoly, Liu, Yu-Tsueng, Springer, Michael, Ksiazek, Thomas G, Erdman, Dean D, Mardis, Elaine R, Hickenbotham, Matthew, Magrini, Vincent, Eldred, James, Latreille, J Phillipe, Wilson, Richard K, Ganem, Don, DeRisi, Joseph L

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Monte Carlo Modeling and Design of Photon Energy Attenuation Layers for >10× Quantum Yield Enhancement in Si-Based Hard X-ray Detectors von Lee, Eldred, Anagnost, Kaitlin M., Wang, Zhehui, James, Michael R., Fossum, Eric R., Liu, Jifeng

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Discovery of Tetrahydropyrazolopyridine as Sphingosine 1-Phosphate Receptor 3 (S1P3)-Sparing S1P1 Agonists Active at Low Oral Doses von Demont, Emmanuel H, Bailey, James M, Bit, Rino A, Brown, Jack A, Campbell, Colin A, Deeks, Nigel, Dowell, Simon J, Eldred, Colin, Gaskin, Pam, Gray, James R J, Haynes, Andrea, Hirst, David J, Holmes, Duncan S, Kumar, Umesh, Morse, Mary A, Osborne, Greg J, Renaux, Jessica F, Seal, Gail A L, Smethurst, Chris A, Taylor, Simon, Watson, Robert, Willis, Robert, Witherington, Jason

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Sensitivity analysis techniques applied to a system of hyperbolic conservation laws von Weirs, V. Gregory, Kamm, James R., Swiler, Laura P., Tarantola, Stefano, Ratto, Marco, Adams, Brian M., Rider, William J., Eldred, Michael S.

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