Metagenomic species profiling using universal phylogenetic marker genes von Sunagawa, Shinichi, Mende, Daniel R, Zeller, Georg, Izquierdo-Carrasco, Fernando, Berger, Simon A, Kultima, Jens Roat, Coelho, Luis Pedro, Arumugam, Manimozhiyan, Tap, Julien, Nielsen, Henrik Bjørn, Rasmussen, Simon, Brunak, Søren, Pedersen, Oluf, Guarner, Francisco, de Vos, Willem M, Wang, Jun, Li, Junhua, Doré, Joël, Ehrlich, S Dusko, Stamatakis, Alexandros, Bork, Peer

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Alterations of the human gut microbiome in liver cirrhosis von Qin, Nan, Yang, Fengling, Li, Ang, Prifti, Edi, Chen, Yanfei, Shao, Li, Guo, Jing, Le Chatelier, Emmanuelle, Yao, Jian, Wu, Lingjiao, Zhou, Jiawei, Ni, Shujun, Liu, Lin, Pons, Nicolas, Batto, Jean Michel, Kennedy, Sean P., Leonard, Pierre, Yuan, Chunhui, Ding, Wenchao, Chen, Yuanting, Hu, Xinjun, Zheng, Beiwen, Qian, Guirong, Xu, Wei, Ehrlich, S. Dusko, Zheng, Shusen, Li, Lanjuan

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Metabolomic and microbiome profiling reveals personalized risk factors for coronary artery disease von Talmor-Barkan, Yeela, Bar, Noam, Shaul, Aviv A., Shahaf, Nir, Godneva, Anastasia, Bussi, Yuval, Lotan-Pompan, Maya, Weinberger, Adina, Shechter, Alon, Chezar-Azerrad, Chava, Arow, Ziad, Hammer, Yoav, Chechi, Kanta, Forslund, Sofia K., Fromentin, Sebastien, Dumas, Marc-Emmanuel, Ehrlich, S. Dusko, Pedersen, Oluf, Kornowski, Ran, Segal, Eran

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Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin von Bolotin, Alexander, Quinquis, Benoit, Sorokin, Alexei, Ehrlich, S. Dusko

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MSPminer: abundance-based reconstitution of microbial pan-genomes from shotgun metagenomic data von Plaza Oñate, Florian, Le Chatelier, Emmanuelle, Almeida, Mathieu, Cervino, Alessandra C L, Gauthier, Franck, Magoulès, Frédéric, Ehrlich, S Dusko, Pichaud, Matthieu

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Emergence of a Cell Wall Protease in the Streptococcus thermophilus Population von DELORME, Christine, BARTHOLINI, Claire, BOLOTINE, Alexander, DUSKO EHRLICH, S, RENAULT, Pierre

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Enterotypes in the landscape of gut microbial community composition von Costea, Paul I., Hildebrand, Falk, Arumugam, Manimozhiyan, Bäckhed, Fredrik, Blaser, Martin J., Bushman, Frederic D., de Vos, Willem M., Ehrlich, S. Dusko, Fraser, Claire M., Hattori, Masahira, Huttenhower, Curtis, Jeffery, Ian B., Knights, Dan, Lewis, James D., Ley, Ruth E., Ochman, Howard, O’Toole, Paul W., Quince, Christopher, Relman, David A., Shanahan, Fergus, Sunagawa, Shinichi, Wang, Jun, Weinstock, George M., Wu, Gary D., Zeller, Georg, Zhao, Liping, Raes, Jeroen, Knight, Rob, Bork, Peer

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Anti-Inflammatory Properties of Streptococcus salivarius, a Commensal Bacterium of the Oral Cavity and Digestive Tract von Kaci, Ghalia, Goudercourt, Denise, Dennin, Véronique, Pot, Bruno, Doré, Joël, Ehrlich, S Dusko, Renault, Pierre, Blottière, Hervé M, Daniel, Catherine, Delorme, Christine

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Changes of the human gut microbiome induced by a fermented milk product von Veiga, Patrick, Pons, Nicolas, Agrawal, Anurag, Oozeer, Raish, Guyonnet, Denis, Brazeilles, Rémi, Faurie, Jean-Michel, van Hylckama Vlieg, Johan E. T., Houghton, Lesley A., Whorwell, Peter J., Ehrlich, S. Dusko, Kennedy, Sean P.

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Commensal Hafnia alvei strain reduces food intake and fat mass in obese mice—a new potential probiotic for appetite and body weight management von Legrand, Romain, Lucas, Nicolas, Dominique, Manon, Azhar, Saida, Deroissart, Camille, Le Solliec, Marie-Anne, Rondeaux, Julie, Nobis, Séverine, Guérin, Charlène, Léon, Fatima, do Rego, Jean-Claude, Pons, Nicolas, Le Chatelier, Emmanuelle, Ehrlich, S. Dusko, Lambert, Gregory, Déchelotte, Pierre, Fetissov, Sergueï O.

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Influence of H7N9 virus infection and associated treatment on human gut microbiota von Qin, Nan, Zheng, Beiwen, Yao, Jian, Guo, Lihua, Zuo, Jian, Wu, Lingjiao, Zhou, Jiawei, Liu, Lin, Guo, Jing, Ni, Shujun, Li, Ang, Zhu, Yixin, Liang, Weifeng, Xiao, Yonghong, Ehrlich, S. Dusko, Li, Lanjuan

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Comparative Metagenomics Revealed Commonly Enriched Gene Sets in Human Gut Microbiomes von Kurokawa, Ken, Itoh, Takehiko, Kuwahara, Tomomi, Oshima, Kenshiro, Toh, Hidehiro, Toyoda, Atsushi, Takami, Hideto, Morita, Hidetoshi, Sharma, Vineet K., Srivastava, Tulika P., Taylor, Todd D., Noguchi, Hideki, Mori, Hiroshi, Ogura, Yoshitoshi, Ehrlich, Dusko S., Itoh, Kikuji, Takagi, Toshihisa, Sakaki, Yoshiyuki, Hayashi, Tetsuya, Hattori, Masahira

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Genome sequence of Bacillus cereus and comparative analysis with Bacillus anthracis von Ivanova, Natalia, Sorokin, Alexei, Anderson, Iain, Galleron, Nathalie, Candelon, Benjamin, Kapatral, Vinayak, Bhattacharyya, Anamitra, Reznik, Gary, Mikhailova, Natalia, Lapidus, Alla, Chu, Lien, Mazur, Michael, Goltsman, Eugene, Larsen, Niels, D'Souza, Mark, Walunas, Theresa, Grechkin, Yuri, Pusch, Gordon, Haselkorn, Robert, Fonstein, Michael, Dusko Ehrlich, S, Overbeek, Ross, Kyrpides, Nikos

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Conjugated C-6 hydroxylated bile acids in serum relate to human metabolic health and gut Clostridia species von Petersen, Anders Ø, Julienne, Hanna, Hyötyläinen, Tuulia, Sen, Partho, Fan, Yong, Pedersen, Helle Krogh, Jäntti, Sirkku, Hansen, Tue H., Nielsen, Trine, Jørgensen, Torben, Hansen, Torben, Myers, Pernille Neve, Nielsen, H. Bjørn, Ehrlich, S. Dusko, Orešič, Matej, Pedersen, Oluf

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Probiotics - little evidence for a link to obesity von Ehrlich, S. Dusko

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Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota von Forslund, Kristoffer, Hildebrand, Falk, Nielsen, Trine, Falony, Gwen, Le Chatelier, Emmanuelle, Sunagawa, Shinichi, Prifti, Edi, Vieira-Silva, Sara, Gudmundsdottir, Valborg, Krogh Pedersen, Helle, Arumugam, Manimozhiyan, Kristiansen, Karsten, Yvonne Voigt, Anita, Vestergaard, Henrik, Hercog, Rajna, Igor Costea, Paul, Roat Kultima, Jens, Li, Junhua, Jørgensen, Torben, Levenez, Florence, Dore, Joël, Bjørn Nielsen, H., Brunak, Søren, Raes, Jeroen, Hansen, Torben, Wang, Jun, Dusko Ehrlich, S., Bork, Peer, Pedersen, Oluf

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A new mutation delivery system for genome‐scale approaches in Bacillus subtilis von Fabret, Céline, Dusko Ehrlich, S., Noirot, Philippe

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Inhibition of the NF-κB Pathway in Human Intestinal Epithelial Cells by Commensal Streptococcus salivarius von KACI, Ghalia, LAKHDARI, Omar, DORE, Joël, DUSKO EHRLICH, S, RENAULT, Pierre, BLOTTIERE, Herve M, DELORME, Christine

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Building the repertoire of dispensable chromosome regions in Bacillus subtilis entails major refinement of cognate large-scale metabolic model von Tanaka, Kosei, Henry, Christopher S, Zinner, Jenifer F, Jolivet, Edmond, Cohoon, Matthew P, Xia, Fangfang, Bidnenko, Vladimir, Ehrlich, S Dusko, Stevens, Rick L, Noirot, Philippe

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Complete sequence and comparative genome analysis of the dairy bacterium Streptococcus thermophilus von Bolotin, A, Quinquis, B, Renault, P, Sorokin, A, Ehrlich, S.D, Kulakauskas, S, Lapidus, A, Goltsman, E, Mazur, M, Pusch, G.D

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