Accelerated Profile HMM Searches von Eddy, Sean R

Volltext

Infernal 1.1: 100-fold faster RNA homology searches von Nawrocki, Eric P, Eddy, Sean R

Volltext

Epigenomic Signatures of Neuronal Diversity in the Mammalian Brain von Mo, Alisa, Mukamel, Eran A., Davis, Fred P., Luo, Chongyuan, Henry, Gilbert L., Picard, Serge, Urich, Mark A., Nery, Joseph R., Sejnowski, Terrence J., Lister, Ryan, Eddy, Sean R., Ecker, Joseph R., Nathans, Jeremy

Volltext

A statistical test for conserved RNA structure shows lack of evidence for structure in lncRNAs von Rivas, Elena, Clements, Jody, Eddy, Sean R

Volltext

Constructing benchmark test sets for biological sequence analysis using independent set algorithms von Petti, Samantha, Eddy, Sean R

Volltext

Computational Analysis of Conserved RNA Secondary Structure in Transcriptomes and Genomes von Eddy, Sean R

Volltext

Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families von Kalvari, Ioanna, Argasinska, Joanna, Quinones-Olvera, Natalia, Nawrocki, Eric P, Rivas, Elena, Eddy, Sean R, Bateman, Alex, Finn, Robert D, Petrov, Anton I

Volltext

Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions von Mistry, Jaina, Finn, Robert D, Eddy, Sean R, Bateman, Alex, Punta, Marco

Volltext

Many, but not all, lineage-specific genes can be explained by homology detection failure von Weisman, Caroline M., Murray, Andrew W., Eddy, Sean R.

Volltext

Hidden Markov model speed heuristic and iterative HMM search procedure von Johnson, L Steven, Eddy, Sean R, Portugaly, Elon

Volltext

Rfam 14: expanded coverage of metagenomic, viral and microRNA families von Kalvari, Ioanna, Nawrocki, Eric P, Ontiveros-Palacios, Nancy, Argasinska, Joanna, Lamkiewicz, Kevin, Marz, Manja, Griffiths-Jones, Sam, Toffano-Nioche, Claire, Gautheret, Daniel, Weinberg, Zasha, Rivas, Elena, Eddy, Sean R, Finn, Robert D, Bateman, Alex, Petrov, Anton I

Volltext

Infernal 1.0: inference of RNA alignments von Nawrocki, Eric P., Kolbe, Diana L., Eddy, Sean R.

Volltext

The Dfam database of repetitive DNA families von Hubley, Robert, Finn, Robert D, Clements, Jody, Eddy, Sean R, Jones, Thomas A, Bao, Weidong, Smit, Arian F A, Wheeler, Travis J

Volltext

Representation learning of genomic sequence motifs with convolutional neural networks von Koo, Peter K, Eddy, Sean R

Volltext

Non-coding RNA genes and the modern RNA world von Eddy, Sean R

Volltext

Study of spark ignition engine fueled with methanol/gasoline fuel blends von Liu, Shenghua, Cuty Clemente, Eddy R., Hu, Tiegang, Wei, Yanjv

Volltext

A probabilistic model of local sequence alignment that simplifies statistical significance estimation von Eddy, Sean R

Volltext

A computational screen for alternative genetic codes in over 250,000 genomes von Shulgina, Yekaterina, Eddy, Sean R

Volltext

Silicon Carbide as a Platform for Power Electronics von Eddy, C. R., Gaskill, D. K.

Volltext

Remote homology search with hidden Potts models von Wilburn, Grey W., Eddy, Sean R.

Volltext