Accurate and complete genomes from metagenomes von Chen, Lin-Xing, Anantharaman, Karthik, Shaiber, Alon, Eren, A. Murat, Banfield, Jillian F.

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Host-specificity among abundant and rare taxa in the sponge microbiome von Reveillaud, Julie, Maignien, Loïs, Eren, A Murat, Huber, Julie A, Apprill, Amy, Sogin, Mitchell L, Vanreusel, Ann

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The gut microbiota of rural papua new guineans: composition, diversity patterns, and ecological processes von Martínez, Inés, Stegen, James C, Maldonado-Gómez, Maria X, Eren, A Murat, Siba, Peter M, Greenhill, Andrew R, Walter, Jens

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Linking pangenomes and metagenomes: the Prochlorococcus metapangenome von Delmont, Tom O, Eren, A Murat

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A filtering method to generate high quality short reads using illumina paired-end technology von Eren, A Murat, Vineis, Joseph H, Morrison, Hilary G, Sogin, Mitchell L

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Discovering new indicators of fecal pollution von McLellan, Sandra L, Eren, A. Murat

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Sewage reflects the microbiomes of human populations von Newton, Ryan J, McLellan, Sandra L, Dila, Deborah K, Vineis, Joseph H, Morrison, Hilary G, Eren, A Murat, Sogin, Mitchell L

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Droplet-based high-throughput cultivation for accurate screening of antibiotic resistant gut microbes von Watterson, William J., Tanyeri, Melikhan, Watson, Andrea R., Cham, Candace M., Shan, Yue, Chang, Eugene B., Eren, A. Murat, Tay, Savas

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Ecological succession and stochastic variation in the assembly of Arabidopsis thaliana phyllosphere communities von Maignien, Loïs, DeForce, Emelia A, Chafee, Meghan E, Eren, A Murat, Simmons, Sheri L

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Minimum entropy decomposition: Unsupervised oligotyping for sensitive partitioning of high-throughput marker gene sequences von Eren, A Murat, Morrison, Hilary G, Lescault, Pamela J, Reveillaud, Julie, Vineis, Joseph H, Sogin, Mitchell L

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Single-amino acid variants reveal evolutionary processes that shape the biogeography of a global SAR11 subclade von Delmont, Tom O, Kiefl, Evan, Kilinc, Ozsel, Esen, Ozcan C, Uysal, Ismail, Rappé, Michael S, Giovannoni, Steven, Eren, A Murat

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DESMAN: a new tool for de novo extraction of strains from metagenomes von Quince, Christopher, Delmont, Tom O, Raguideau, Sébastien, Alneberg, Johannes, Darling, Aaron E, Collins, Gavin, Eren, A Murat

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Oligotyping: differentiating between closely related microbial taxa using 16S rRNA gene data von Eren, A. Murat, Maignien, Loïs, Sul, Woo Jun, Murphy, Leslie G., Grim, Sharon L., Morrison, Hilary G., Sogin, Mitchell L., Freckleton, Robert

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Oligotyping analysis of the human oral microbiome von Eren, A Murat, Borisy, Gary G, Huse, Susan M, Mark Welch, Jessica L

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Exploring the diversity of Gardnerella vaginalis in the genitourinary tract microbiota of monogamous couples through subtle nucleotide variation von Eren, A Murat, Zozaya, Marcela, Taylor, Christopher M, Dowd, Scot E, Martin, David H, Ferris, Michael J

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STRONG: metagenomics strain resolution on assembly graphs von Quince, Christopher, Nurk, Sergey, Raguideau, Sebastien, James, Robert, Soyer, Orkun S., Summers, J. Kimberly, Limasset, Antoine, Eren, A. Murat, Chikhi, Rayan, Darling, Aaron E.

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Interferon inducible pseudouridine modification in human mRNA by quantitative nanopore profiling von Huang, Sihao, Zhang, Wen, Katanski, Christopher D., Dersh, Devin, Dai, Qing, Lolans, Karen, Yewdell, Jonathan, Eren, A. Murat, Pan, Tao

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Recurrent patterns of microdiversity in a temperate coastal marine environment von Chafee, Meghan, Fernàndez-Guerra, Antonio, Buttigieg, Pier Luigi, Gerdts, Gunnar, Eren, A Murat, Teeling, Hanno, Amann, Rudolf I

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Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea von Bowers, Robert M, Kyrpides, Nikos C, Stepanauskas, Ramunas, Harmon-Smith, Miranda, Doud, Devin, Reddy, T B K, Schulz, Frederik, Jarett, Jessica, Rivers, Adam R, Eloe-Fadrosh, Emiley A, Tringe, Susannah G, Ivanova, Natalia N, Copeland, Alex, Clum, Alicia, Becraft, Eric D, Malmstrom, Rex R, Birren, Bruce, Podar, Mircea, Bork, Peer, Weinstock, George M, Garrity, George M, Dodsworth, Jeremy A, Yooseph, Shibu, Sutton, Granger, Glöckner, Frank O, Gilbert, Jack A, Nelson, William C, Hallam, Steven J, Jungbluth, Sean P, Ettema, Thijs J G, Tighe, Scott, Konstantinidis, Konstantinos T, Liu, Wen-Tso, Baker, Brett J, Rattei, Thomas, Eisen, Jonathan A, Hedlund, Brian, McMahon, Katherine D, Fierer, Noah, Knight, Rob, Finn, Rob, Cochrane, Guy, Karsch-Mizrachi, Ilene, Tyson, Gene W, Rinke, Christian, Lapidus, Alla, Meyer, Folker, Yilmaz, Pelin, Parks, Donovan H, Murat Eren, A, Schriml, Lynn, Banfield, Jillian F, Hugenholtz, Philip, Woyke, Tanja

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Functional and genetic markers of niche partitioning among enigmatic members of the human oral microbiome von Shaiber, Alon, Willis, Amy D., Delmont, Tom O., Roux, Simon, Chen, Lin-Xing, Schmid, Abigail C., Yousef, Mahmoud, Watson, Andrea R., Lolans, Karen, Esen, Ozcan C., Lee, Sonny T. M., Downey, Nora, Morrison, Hilary G., Dewhirst, Floyd E., Welch, Jessica L. Mark, Eren, A. Murat

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