Modeling the effects of lipid peroxidation during ferroptosis on membrane properties von Agmon, Eran, Solon, Jérôme, Bassereau, Patricia, Stockwell, Brent R.

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A Multi-Scale Approach to Modeling E. coli Chemotaxis von Agmon, Eran, Spangler, Ryan K.

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T cell-mediated curation and restructuring of tumor tissue coordinates an effective immune response von Hickey, John W., Haist, Maximillian, Horowitz, Nina, Caraccio, Chiara, Tan, Yuqi, Rech, Andrew J., Baertsch, Marc-Andrea, Rovira-Clavé, Xavier, Zhu, Bokai, Vazquez, Gustavo, Barlow, Graham, Agmon, Eran, Goltsev, Yury, Sunwoo, John B., Covert, Markus, Nolan, Garry P.

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Whole-cell modeling of E. coli colonies enables quantification of single-cell heterogeneity in antibiotic responses von Skalnik, Christopher J, Cheah, Sean Y, Yang, Mica Y, Wolff, Mattheus B, Spangler, Ryan K, Talman, Lee, Morrison, Jerry H, Peirce, Shayn M, Agmon, Eran, Covert, Markus W

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Deriving the bodily grounding of living beings with molecular autopoiesis von Agmon, Eran

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Lipid homeostasis and regulated cell death von Agmon, Eran, Stockwell, Brent R

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Comparing spatial biophysical simulations across scales and methods von Vegesna, Karthik R., Mogre, Saurabh S., Yu, Jessica, Lyons, Blair, Raghunathan, Aadarsh, Agmon, Eran, Akamatsu, Matthew, Johnson, Graham T.

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Simultaneous cross-evaluation of heterogeneous E. coli datasets via mechanistic simulation von Macklin, Derek N, Ahn-Horst, Travis A, Choi, Heejo, Ruggero, Nicholas A, Carrera, Javier, Mason, John C, Sun, Gwanggyu, Agmon, Eran, DeFelice, Mialy M, Maayan, Inbal, Lane, Keara, Spangler, Ryan K, Gillies, Taryn E, Paull, Morgan L, Akhter, Sajia, Bray, Samuel R, Weaver, Daniel S, Keseler, Ingrid M, Karp, Peter D, Morrison, Jerry H, Covert, Markus W

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Building the next generation of virtual cells to understand cellular biology von Johnson, Graham T., Agmon, Eran, Akamatsu, Matthew, Lundberg, Emma, Lyons, Blair, Ouyang, Wei, Quintero-Carmona, Omar A., Riel-Mehan, Megan, Rafelski, Susanne, Horwitz, Rick

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Oscillatory hypoxia induced gene expression predicts low survival in human breast cancer patients von Suhail, Yasir, Liu, Yamin, Du, Wenqiang, Afzal, Junaid, Qiu, Xihua, Atiq, Amina, Vera‐Licona, Paola, Agmon, Eran, Kshitiz

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Vivarium: an interface and engine for integrative multiscale modeling in computational biology von Agmon, Eran, Spangler, Ryan K, Skalnik, Christopher J, Poole, William, Peirce, Shayn M, Morrison, Jerry H, Covert, Markus W

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Foundations of a Compositional Systems Biology von Agmon, Eran

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Foundations of a Compositional Systems Biology von Agmon, Eran

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A forecast for large-scale, predictive biology: Lessons from meteorology von Covert, Markus W., Gillies, Taryn E., Kudo, Takamasa, Agmon, Eran

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Multiscale models of infection von Talman, Lee, Agmon, Eran, Peirce, Shayn M., Covert, Markus W.

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Integrating multiplexed imaging and multiscale modeling identifies tumor phenotype conversion as a critical component of therapeutic T cell efficacy von Hickey, John W., Agmon, Eran, Horowitz, Nina, Tan, Tze-Kai, Lamore, Matthew, Sunwoo, John B., Covert, Markus W., Nolan, Garry P.

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Simultaneous cross-evaluation of heterogeneous E. coli datasets via mechanistic simulation von Macklin, Derek N., Ahn-Horst, Travis A., Choi, Heejo, Ruggero, Nicholas A., Carrera, Javier, Mason, John C., Sun, Gwanggyu, Agmon, Eran, DeFelice, Mialy M., Maayan, Inbal, Lane, Keara, Spangler, Ryan K., Gillies, Taryn E., Paull, Morgan L., Akhter, Sajia, Bray, Samuel R., Weaver, Daniel S., Keseler, Ingrid M., Karp, Peter D., Morrison, Jerry H., Covert, Markus W.

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The evolution and analysis of action switching in embodied agents von Agmon, Eran, Beer, Randall D

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Foundations of a Compositional Systems Biology von Agmon, Eran

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Continuous blood pressure measurement von Klein, Roi, Nomazov, Alexei, Barak, Ilan, Agmon, Eran, Neuberger, Nadav

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