Milestoning: An Efficient Approach for Atomically Detailed Simulations of Kinetics in Biophysics von Elber, Ron

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Perspective: Computer simulations of long time dynamics von Elber, Ron

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Ligand diffusion in globins: simulations versus experiment von Elber, Ron

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Computing time scales from reaction coordinates by milestoning von Faradjian, Anton K, Elber, Ron

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Defect Formation and Peptide Permeation across Phospholipid Membranes von Elber, Ron

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Interfacial Dynamics in Lipid Membranes: The Effects of Headgroup Structures von Valentine, Mason L, Waterland, Maya K, Fathizadeh, Arman, Elber, Ron, Baiz, Carlos R

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On the assumptions underlying milestoning von Vanden-Eijnden, Eric, Venturoli, Maddalena, Ciccotti, Giovanni, Elber, Ron

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Automated Optimization of Potential Parameters von Di Pierro, Michele, Elber, Ron

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Computational Exploration of Mobile Ion Distributions around RNA Duplex von Kirmizialtin, Serdal, Elber, Ron

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Physiological Calcium Concentrations Slow Dynamics at the Lipid-Water Interface von Valentine, Mason L., Cardenas, Alfredo E., Elber, Ron, Baiz, Carlos R.

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The transition between active and inactive conformations of Abl kinase studied by rock climbing and Milestoning von Narayan, Brajesh, Fathizadeh, Arman, Templeton, Clark, He, Peng, Arasteh, Shima, Elber, Ron, Buchete, Nicolae-Viorel, Levy, Ron M.

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A new paradigm for atomically detailed simulations of kinetics in biophysical systems von Elber, Ron

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Molecular kinetics in condensed phases: theory, simulation, and analysis von Elber, Ron, Makarov, Dmitrii E, Orland, Henri

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A coarse-grained potential for fold recognition and molecular dynamics simulations of proteins von Májek, Peter, Elber, Ron

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Atomically detailed simulation of the recovery stroke in myosin by Milestoning von Elber, Ron, West, Anthony

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The Structures of Heterogeneous Membranes and Their Interactions with an Anticancer Peptide: A Molecular Dynamics Study von Abbas, Ghulam, Cardenas, Alfredo E, Elber, Ron

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Calculating Iso-Committor Surfaces as Optimal Reaction Coordinates with Milestoning von Elber, Ron, Bello-Rivas, Juan M, Ma, Piao, Cardenas, Alfredo E, Fathizadeh, Arman

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Comparison of Accuracy and Efficiency of Milestoning Variants: Introducing Buffer Milestoning von Narayan, Brajesh, Elber, Ron

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SSALN: An alignment algorithm using structure-dependent substitution matrices and gap penalties learned from structurally aligned protein pairs von Qiu, Jian, Elber, Ron

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Ion Permeation through a Phospholipid Membrane: Transition State, Path Splitting, and Calculation of Permeability von Fathizadeh, Arman, Elber, Ron

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