PHANOTATE: a novel approach to gene identification in phage genomes von McNair, Katelyn, Zhou, Carol, Dinsdale, Elizabeth A, Souza, Brian, Edwards, Robert A

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Computational approaches to predict bacteriophage–host relationships von Edwards, Robert A., McNair, Katelyn, Faust, Karoline, Raes, Jeroen, Dutilh, Bas E.

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The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST) von Overbeek, Ross, Olson, Robert, Pusch, Gordon D, Olsen, Gary J, Davis, James J, Disz, Terry, Edwards, Robert A, Gerdes, Svetlana, Parrello, Bruce, Shukla, Maulik, Vonstein, Veronika, Wattam, Alice R, Xia, Fangfang, Stevens, Rick

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The Cytokine IL-22 Promotes Pathogen Colonization by Suppressing Related Commensal Bacteria von Behnsen, Judith, Jellbauer, Stefan, Wong, Christina P., Edwards, Robert A., George, Michael D., Ouyang, Wenjun, Raffatellu, Manuela

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Microcins mediate competition among Enterobacteriaceae in the inflamed gut von Sassone-Corsi, Martina, Nuccio, Sean-Paul, Liu, Henry, Hernandez, Dulcemaria, Vu, Christine T., Takahashi, Amy A., Edwards, Robert A., Raffatellu, Manuela

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PhANNs, a fast and accurate tool and web server to classify phage structural proteins von Cantu, Vito Adrian, Salamon, Peter, Seguritan, Victor, Redfield, Jackson, Salamon, David, Edwards, Robert A., Segall, Anca M.

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RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes von Brettin, Thomas, Davis, James J., Disz, Terry, Edwards, Robert A., Gerdes, Svetlana, Olsen, Gary J., Olson, Robert, Overbeek, Ross, Parrello, Bruce, Pusch, Gordon D., Shukla, Maulik, Thomason, James A., Stevens, Rick, Vonstein, Veronika, Wattam, Alice R., Xia, Fangfang

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SUPER-FOCUS: a tool for agile functional analysis of shotgun metagenomic data von Silva, Genivaldo Gueiros Z, Green, Kevin T, Dutilh, Bas E, Edwards, Robert A

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PHACTS, a computational approach to classifying the lifestyle of phages von MCNAIR, Katelyn, BAILEY, Barbara A, EDWARDS, Robert A

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Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceans von Coutinho, Felipe H., Silveira, Cynthia B., Gregoracci, Gustavo B., Thompson, Cristiane C., Edwards, Robert A., Brussaard, Corina P. D., Dutilh, Bas E., Thompson, Fabiano L.

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Probiotic Bacteria Reduce Salmonella Typhimurium Intestinal Colonization by Competing for Iron von Deriu, Elisa, Liu, Janet Z., Pezeshki, Milad, Edwards, Robert A., Ochoa, Roxanna J., Contreras, Heidi, Libby, Stephen J., Fang, Ferric C., Raffatellu, Manuela

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Linking Lipid Metabolism to the Innate Immune Response in Macrophages through Sterol Regulatory Element Binding Protein-1a von Im, Seung-Soon, Yousef, Leyla, Blaschitz, Christoph, Liu, Janet Z., Edwards, Robert A., Young, Stephen G., Raffatellu, Manuela, Osborne, Timothy F.

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Transposases are the most abundant, most ubiquitous genes in nature von Aziz, Ramy K, Breitbart, Mya, Edwards, Robert A

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SEED servers: high-performance access to the SEED genomes, annotations, and metabolic models von Aziz, Ramy K, Devoid, Scott, Disz, Terrence, Edwards, Robert A, Henry, Christopher S, Olsen, Gary J, Olson, Robert, Overbeek, Ross, Parrello, Bruce, Pusch, Gordon D, Stevens, Rick L, Vonstein, Veronika, Xia, Fangfang

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Wnt signaling directs a metabolic program of glycolysis and angiogenesis in colon cancer von Pate, Kira T, Stringari, Chiara, Sprowl-Tanio, Stephanie, Wang, Kehui, TeSlaa, Tara, Hoverter, Nate P, McQuade, Miriam M, Garner, Chad, Digman, Michelle A, Teitell, Michael A, Edwards, Robert A, Gratton, Enrico, Waterman, Marian L

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PRFect: a tool to predict programmed ribosomal frameshifts in prokaryotic and viral genomes von McNair, Katelyn, Salamon, Peter, Edwards, Robert A, Segall, Anca M

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Metagenomic analysis of stressed coral holobionts von Thurber, Rebecca Vega, Willner-Hall, Dana, Rodriguez-Mueller, Beltran, Desnues, Christelle, Edwards, Robert A, Angly, Florent, Dinsdale, Elizabeth, Kelly, Linda, Rohwer, Forest

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Analysis of Spounaviruses as a Case Study for the Overdue Reclassification of Tailed Phages von Barylski, Jakub, Enault, François, Dutilh, Bas E., Schuller, Margo B.P., Edwards, Robert A., Gillis, Annika, Klumpp, Jochen, Knezevic, Petar, Krupovic, Mart, Kuhn, Jens H., Lavigne, Rob, Oksanen, Hanna M., Sullivan, Matthew B., Jang, Ho Bin, Simmonds, Peter, Aiewsakun, Pakorn, Wittmann, Johannes, Tolstoy, Igor, Brister, J. Rodney, Kropinski, Andrew M., Adriaenssens, Evelien M.

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Zinc Sequestration by the Neutrophil Protein Calprotectin Enhances Salmonella Growth in the Inflamed Gut von Liu, Janet Z., Jellbauer, Stefan, Poe, Adam J., Ton, Vivian, Pesciaroli, Michele, Kehl-Fie, Thomas E., Restrepo, Nicole A., Hosking, Martin P., Edwards, Robert A., Battistoni, Andrea, Pasquali, Paolo, Lane, Thomas E., Chazin, Walter J., Vogl, Thomas, Roth, Johannes, Skaar, Eric P., Raffatellu, Manuela

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Microbial ecology of four coral atolls in the Northern Line Islands von Dinsdale, Elizabeth A, Pantos, Olga, Smriga, Steven, Edwards, Robert A, Angly, Florent, Wegley, Linda, Hatay, Mark, Hall, Dana, Brown, Elysa, Haynes, Matthew, Krause, Lutz, Sala, Enric, Sandin, Stuart A, Thurber, Rebecca Vega, Willis, Bette L, Azam, Farooq, Knowlton, Nancy, Rohwer, Forest

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