Transcriptome analysis of contrasting resistance to herbivory by Empoasca fabae in two shrub willow species and their hybrid progeny von Wang, Wanyan, Carlson, Craig H, Smart, Lawrence B, Carlson, John E

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FLOWERING LOCUS T duplication coordinates reproductive and vegetative growth in perennial poplar von Hsu, Chuan-Yu, Adams, Joshua P, Kim, Hyejin, No, Kyoungok, Ma, Caiping, Strauss, Steven H, Drnevich, Jenny, Vandervelde, Lindsay, Ellis, Jeffrey D, Rice, Brandon M, Wickett, Norman, Gunter, Lee E, Tuskan, Gerald A, Brunner, Amy M, Page, Grier P, Barakat, Abdelali, Carlson, John E, dePamphilis, Claude W, Luthe, Dawn S, Yuceer, Cetin

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Comparison of the transcriptomes of American chestnut (Castanea dentata) and Chinese chestnut (Castanea mollissima) in response to the chestnut blight infection von Barakat, Abdelali, DiLoreto, Denis S, Zhang, Yi, Smith, Chris, Baier, Kathleen, Powell, William A, Wheeler, Nicholas, Sederoff, Ron, Carlson, John E

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Metagenomic Profiling Reveals Lignocellulose Degrading System in a Microbial Community Associated with a Wood-Feeding Beetle von Scully, Erin D, Geib, Scott M, Hoover, Kelli, Tien, Ming, Tringe, Susannah G, Barry, Kerrie W, Glavina del Rio, Tijana, Chovatia, Mansi, Herr, Joshua R, Carlson, John E, Oliveira, Pedro Lagerblad

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Editorial: Deciphering mechanisms of plant adaptation and resistance under cold temperature stress von Shah, Sabir Hussain, Carlson, John E, Niklas, Karl J, Benavides-Mendoza, Adalberto, Ricachenevsky, Felipe Klein

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Populus euphratica: the transcriptomic response to drought stress von Tang, Sha, Liang, Haiying, Yan, Donghui, Zhao, Ying, Han, Xiao, Carlson, John E, Xia, Xinli, Yin, Weilun

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Midgut transcriptome profiling of Anoplophora glabripennis, a lignocellulose degrading cerambycid beetle von Scully, Erin D, Hoover, Kelli, Carlson, John E, Tien, Ming, Geib, Scott M

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Lignin degradation in wood-feeding insects von Geib, Scott M, Filley, Timothy R, Hatcher, Patrick G, Hoover, Kelli, Carlson, John E, Jimenez-Gasco, Maria del Mar, Nakagawa-Izumi, Akiko, Sleighter, Rachel L, Tien, Ming

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Use of Genomic Resources to Assess Adaptive Divergence and Introgression in Oaks von Lazic, Desanka, Hipp, Andrew L., Carlson, John E., Gailing, Oliver

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Evolution of Genome Size and Complexity in Pinus von Morse, Alison M, Peterson, Daniel G, Islam-Faridi, M. Nurul, Smith, Katherine E, Magbanua, Zenaida, Garcia, Saul A, Kubisiak, Thomas L, Amerson, Henry V, Carlson, John E, Nelson, C. Dana, Davis, John M

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Comparison of next generation sequencing technologies for transcriptome characterization von Wall, P Kerr, Leebens-Mack, Jim, Chanderbali, André S, Barakat, Abdelali, Wolcott, Erik, Liang, Haiying, Landherr, Lena, Tomsho, Lynn P, Hu, Yi, Carlson, John E, Ma, Hong, Schuster, Stephan C, Soltis, Douglas E, Soltis, Pamela S, Altman, Naomi, dePamphilis, Claude W

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Widespread genome duplications throughout the history of flowering plants von Cui, Liying, Wall, P Kerr, Leebens-Mack, James H, Lindsay, Bruce G, Soltis, Douglas E, Doyle, Jeff J, Soltis, Pamela S, Carlson, John E, Arumuganathan, Kathiravetpilla, Barakat, Abdelali, Albert, Victor A, Ma, Hong, dePamphilis, Claude W

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Integrated analysis of miRNAome transcriptome and degradome reveals miRNA-target modules governing floral florescence development and senescence across early- and late-flowering ge... von Guo, Lili, Li, Yuying, Zhang, Chenjie, Wang, Zhanying, Carlson, John E, Yin, Weinlun, Zhang, Xiuxin, Hou, Xiaogai

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Conservation and divergence of microRNAs in Populus von Barakat, Abdelali, Wall, Phillip K, Diloreto, Scott, Depamphilis, Claude W, Carlson, John E

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Genome-wide association study of 23 flowering phenology traits and 4 floral agronomic traits in tree peony ( Paeonia section Moutan DC.) reveals five genes known to regulate flower... von Li, Yuying, Guo, Lili, Wang, Zhanying, Zhao, Dehui, Guo, Dalong, Carlson, John E., Yin, Weilun, Hou, Xiaogai

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Substantial genome synteny preservation among woody angiosperm species: comparative genomics of Chinese chestnut (Castanea mollissima) and plant reference genomes von Staton, Margaret, Zhebentyayeva, Tetyana, Olukolu, Bode, Fang, Guang Chen, Nelson, Dana, Carlson, John E, Abbott, Albert G

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High-quality genetic mapping with ddRADseq in the non-model tree Quercus rubra von Konar, Arpita, Choudhury, Olivia, Bullis, Rebecca, Fiedler, Lauren, Kruser, Jacqueline M, Stephens, Melissa T, Gailing, Oliver, Schlarbaum, Scott, Coggeshall, Mark V, Staton, Margaret E, Carlson, John E, Emrich, Scott, Romero-Severson, Jeanne

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Will “Tall Oaks from Little Acorns Grow”? White Oak (Quercus alba) Biology in the Anthropocene von Abbott, Albert, Staton, Margaret, Lhotka, John, DeWald, Laura, Zhebentyayeva, Tetyana, Kapoor, Beant, Thomas, Austin, Larson, Drew, Hadziabdic, Denita, DeBolt, Seth, Nelson, C., Carlson, John

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Phylogeny and expression profiling of CAD and CAD-like genes in hybrid Populus (P. deltoides x P. nigra): evidence from herbivore damage for subfunctionalization and functional div... von Barakat, Abdelali, Bagniewska-Zadworna, Agnieszka, Frost, Christopher J, Carlson, John E

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Preliminary Genomic Characterization of Ten Hardwood Tree Species from Multiplexed Low Coverage Whole Genome Sequencing von Staton, Margaret, Best, Teodora, Khodwekar, Sudhir, Owusu, Sandra, Xu, Tao, Xu, Yi, Jennings, Tara, Cronn, Richard, Arumuganathan, A Kathiravetpilla, Coggeshall, Mark, Gailing, Oliver, Liang, Haiying, Romero-Severson, Jeanne, Schlarbaum, Scott, Carlson, John E

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