Target classification in the 14th round of the critical assessment of protein structure prediction (CASP14) von Kinch, Lisa N., Schaeffer, R. Dustin, Kryshtafovych, Andriy, Grishin, Nick V.

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ECOD: an evolutionary classification of protein domains von Cheng, Hua, Schaeffer, R Dustin, Liao, Yuxing, Kinch, Lisa N, Pei, Jimin, Shi, Shuoyong, Kim, Bong-Hyun, Grishin, Nick V

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Accurate prediction of protein structures and interactions using a three-track neural network von Baek, Minkyung, DiMaio, Frank, Anishchenko, Ivan, Dauparas, Justas, Ovchinnikov, Sergey, Lee, Gyu Rie, Wang, Jue, Cong, Qian, Kinch, Lisa N, Schaeffer, R Dustin, Millán, Claudia, Park, Hahnbeom, Adams, Carson, Glassman, Caleb R, DeGiovanni, Andy, Pereira, Jose H, Rodrigues, Andria V, van Dijk, Alberdina A, Ebrecht, Ana C, Opperman, Diederik J, Sagmeister, Theo, Buhlheller, Christoph, Pavkov-Keller, Tea, Rathinaswamy, Manoj K, Dalwadi, Udit, Yip, Calvin K, Burke, John E, Garcia, K Christopher, Grishin, Nick V, Adams, Paul D, Read, Randy J, Baker, David

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Topology evaluation of models for difficult targets in the 14th round of the critical assessment of protein structure prediction (CASP14) von Kinch, Lisa N., Pei, Jimin, Kryshtafovych, Andriy, Schaeffer, R. Dustin, Grishin, Nick V.

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DPAM: A domain parser for AlphaFold models von Zhang, Jing, Schaeffer, R. Dustin, Durham, Jesse, Cong, Qian, Grishin, Nick V.

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ECOD: new developments in the evolutionary classification of domains von Schaeffer, R Dustin, Liao, Yuxing, Cheng, Hua, Grishin, Nick V

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Functional analysis of Rossmann-like domains reveals convergent evolution of topology and reaction pathways von Medvedev, Kirill E, Kinch, Lisa N, Schaeffer, R Dustin, Grishin, Nick V

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ECOD domain classification of 48 whole proteomes from AlphaFold Structure Database using DPAM2 von Schaeffer, R Dustin, Zhang, Jing, Medvedev, Kirill E, Kinch, Lisa N, Cong, Qian, Grishin, Nick V

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DrugDomain: The evolutionary context of drugs and small molecules bound to domains von Medvedev, Kirill E., Schaeffer, R. Dustin, Grishin, Nick V.

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A Fifth of the Protein World: Rossmann-like Proteins as an Evolutionarily Successful Structural unit von Medvedev, Kirill E., Kinch, Lisa N., Dustin Schaeffer, R., Pei, Jimin, Grishin, Nick V.

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Pathogenic mutation hotspots in protein kinase domain structure von Medvedev, Kirill E., Schaeffer, R. Dustin, Pei, Jimin, Grishin, Nick V.

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Assessment of domain interactions in the fourteenth round of the Critical Assessment of Structure Prediction (CASP14) von Schaeffer, R. Dustin, Kinch, Lisa, Kryshtafovych, Andriy, Grishin, Nick V.

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Bridging the Gap between Sequence and Structure Classifications of Proteins with AlphaFold Models von Pei, Jimin, Andreeva, Antonina, Chuguransky, Sara, Lázaro Pinto, Beatriz, Paysan-Lafosse, Typhaine, Dustin Schaeffer, R., Bateman, Alex, Cong, Qian, Grishin, Nick V.

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Manual classification strategies in the ECOD database von Cheng, Hua, Liao, Yuxing, Schaeffer, R. Dustin, Grishin, Nick V.

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ECOD: integrating classifications of protein domains from experimental and predicted structures von Schaeffer, R Dustin, Medvedev, Kirill E, Andreeva, Antonina, Chuguransky, Sara Rocio, Pinto, Beatriz Lazaro, Zhang, Jing, Cong, Qian, Bateman, Alex, Grishin, Nick V

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Pan-cancer structurome reveals overrepresentation of beta sandwiches and underrepresentation of alpha helical domains von Medvedev, Kirill E., Schaeffer, R. Dustin, Chen, Kenneth S., Grishin, Nick V.

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Structure classification of the proteins from Salmonella enterica pangenome revealed novel potential pathogenicity islands von Medvedev, Kirill E., Zhang, Jing, Schaeffer, R. Dustin, Kinch, Lisa N., Cong, Qian, Grishin, Nick V.

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Insights into virulence: structure classification of the Vibrio parahaemolyticus RIMD mobilome von Kinch, Lisa N, Schaeffer, R Dustin, Zhang, Jing, Cong, Qian, Orth, Kim, Grishin, Nick

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Estimation of Uncertainties in the Global Distance Test (GDT_TS) for CASP Models von Li, Wenlin, Schaeffer, R Dustin, Otwinowski, Zbyszek, Grishin, Nick V

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Dynameomics: A Comprehensive Database of Protein Dynamics von van der Kamp, Marc W., Schaeffer, R. Dustin, Jonsson, Amanda L., Scouras, Alexander D., Simms, Andrew M., Toofanny, Rudesh D., Benson, Noah C., Anderson, Peter C., Merkley, Eric D., Rysavy, Steven, Bromley, Dennis, Beck, David A.C., Daggett, Valerie

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