Efficient haplotype matching and storage using the positional Burrows–Wheeler transform (PBWT) von Durbin, Richard

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Inference of human population history from individual whole-genome sequences von Li, Heng, Durbin, Richard

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Revising the human mutation rate: implications for understanding human evolution von Scally, Aylwyn, Durbin, Richard

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Efficient de novo assembly of large genomes using compressed data structures von Simpson, Jared T, Durbin, Richard

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Identifying and removing haplotypic duplication in primary genome assemblies von Guan, Dengfeng, McCarthy, Shane A, Wood, Jonathan, Howe, Kerstin, Wang, Yadong, Durbin, Richard

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Mapping short DNA sequencing reads and calling variants using mapping quality scores von Li, Heng, Ruan, Jue, Durbin, Richard

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BCFtools/RoH: a hidden Markov model approach for detecting autozygosity from next-generation sequencing data von Narasimhan, Vagheesh, Danecek, Petr, Scally, Aylwyn, Xue, Yali, Tyler-Smith, Chris, Durbin, Richard

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MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads von Uliano-Silva, Marcela, Ferreira, João Gabriel R N, Krasheninnikova, Ksenia, Formenti, Giulio, Abueg, Linelle, Torrance, James, Myers, Eugene W, Durbin, Richard, Blaxter, Mark, McCarthy, Shane A

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A Bayesian framework to account for complex non-genetic factors in gene expression levels greatly increases power in eQTL studies von Stegle, Oliver, Parts, Leopold, Durbin, Richard, Winn, John

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SNP detection and genotyping from low-coverage sequencing data on multiple diploid samples von Le, Si Quang, Durbin, Richard

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Variation graph toolkit improves read mapping by representing genetic variation in the reference von Garrison, Erik, Sirén, Jouni, Novak, Adam M, Hickey, Glenn, Eizenga, Jordan M, Dawson, Eric T, Jones, William, Garg, Shilpa, Markello, Charles, Lin, Michael F, Paten, Benedict, Durbin, Richard

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Haplotype-aware graph indexes von Sirén, Jouni, Garrison, Erik, Novak, Adam M, Paten, Benedict, Durbin, Richard

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The Sequence Alignment/Map format and SAMtools von Li, Heng, Handsaker, Bob, Wysoker, Alec, Fennell, Tim, Ruan, Jue, Homer, Nils, Marth, Gabor, Abecasis, Goncalo, Durbin, Richard

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Reference-based phasing using the Haplotype Reference Consortium panel von Loh, Po-Ru, Danecek, Petr, Palamara, Pier Francesco, Fuchsberger, Christian, A Reshef, Yakir, K Finucane, Hilary, Schoenherr, Sebastian, Forer, Lukas, McCarthy, Shane, Abecasis, Goncalo R, Durbin, Richard, L Price, Alkes

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GeneWise and Genomewise von Birney, Ewan, Clamp, Michele, Durbin, Richard

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Sequence locally, think globally: The Darwin Tree of Life Project von Blaxter, Mark, Mieszkowska, Nova, Di Palma, Federica, Holland, Peter, Durbin, Richard, Richards, Thomas, Berriman, Matthew, Kersey, Paul, Hollingsworth, Peter, Wilson, Willie, Twyford, Alex, Gaya, Ester, Lawniczak, Mara, Lewis, Owen, Broad, Gavin, Howe, Kevin, Hart, Michelle, Flicek, Paul, Barnes, Ian

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Removing reference bias and improving indel calling in ancient DNA data analysis by mapping to a sequence variation graph von Martiniano, Rui, Garrison, Erik, Jones, Eppie R., Manica, Andrea, Durbin, Richard

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Contrasting evolutionary genome dynamics between domesticated and wild yeasts von Yue, Jia-Xing, Li, Jing, Aigrain, Louise, Hallin, Johan, Persson, Karl, Oliver, Karen, Bergström, Anders, Coupland, Paul, Warringer, Jonas, Lagomarsino, Marco Cosentino, Fischer, Gilles, Durbin, Richard, Liti, Gianni

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Efficient construction of an assembly string graph using the FM-index von Simpson, Jared T., Durbin, Richard

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Genomic islands of speciation separate cichlid ecomorphs in an East African crater lake von Malinsky, Milan, Challis, Richard J., Tyers, Alexandra M., Schiffels, Stephan, Terai, Yohey, Ngatunga, Benjamin P., Miska, Eric A., Durbin, Richard, Genner, Martin J., Turner, George F.

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