Meticillin-resistant Staphylococcus aureus with a novel mecA homologue in human and bovine populations in the UK and Denmark: a descriptive study von García-Álvarez, Laura, PhD, Holden, Matthew TG, PhD, Lindsay, Heather, BSc, Webb, Cerian R, PhD, Brown, Derek FJ, PhD, Curran, Martin D, PhD, Walpole, Enid, FIMLS, Brooks, Karen, BSc, Pickard, Derek J, PhD, Teale, Christopher, MRCVS, Parkhill, Julian, Prof, Bentley, Stephen D, PhD, Edwards, Giles F, FRCPath, Girvan, E Kirsty, MSc, Kearns, Angela M, PhD, Pichon, Bruno, PhD, Hill, Robert LR, PhD, Larsen, Anders Rhod, PhD, Skov, Robert L, MD, Peacock, Sharon J, Prof, Maskell, Duncan J, Prof, Holmes, Mark A, Dr

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Patterns of genome evolution that have accompanied host adaptation in Salmonella von Langridge, Gemma C, Fookes, Maria, Connor, Thomas R, Feltwell, Theresa, Feasey, Nicholas, Parsons, Bryony N, Seth-Smith, Helena M B, Barquist, Lars, Stedman, Anna, Humphrey, Tom, Wigley, Paul, Peters, Sarah E, Maskell, Duncan J, Corander, Jukka, Chabalgoity, Jose A, Barrow, Paul, Parkhill, Julian, Dougan, Gordon, Thomson, Nicholas R

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Simultaneous assay of every Salmonella Typhi gene using one million transposon mutants von Langridge, Gemma C, Phan, Minh-Duy, Turner, Daniel J, Perkins, Timothy T, Parts, Leopold, Haase, Jana, Charles, Ian, Maskell, Duncan J, Peters, Sarah E, Dougan, Gordon, Wain, John, Parkhill, Julian, Turner, A Keith

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A strand-specific RNA-Seq analysis of the transcriptome of the typhoid bacillus Salmonella typhi von Perkins, Timothy T, Kingsley, Robert A, Fookes, Maria C, Gardner, Paul P, James, Keith D, Yu, Lu, Assefa, Samuel A, He, Miao, Croucher, Nicholas J, Pickard, Derek J, Maskell, Duncan J, Parkhill, Julian, Choudhary, Jyoti, Thomson, Nicholas R, Dougan, Gordon

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Molecular insights into farm animal and zoonotic Salmonella infections von Stevens, Mark P., Humphrey, Tom J., Maskell, Duncan J.

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Phylogenetic analyses and antimicrobial resistance profiles of Campylobacter spp. from diarrhoeal patients and chickens in Botswana von de Vries, Stefan P W, Vurayai, Moses, Holmes, Mark, Gupta, Srishti, Bateman, Michael, Goldfarb, David, Maskell, Duncan J, Matsheka, Maitshwarelo Ignatius, Grant, Andrew J

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Comprehensive assignment of roles for Salmonella typhimurium genes in intestinal colonization of food-producing animals von Chaudhuri, Roy R, Morgan, Eirwen, Peters, Sarah E, Pleasance, Stephen J, Hudson, Debra L, Davies, Holly M, Wang, Jinhong, van Diemen, Pauline M, Buckley, Anthony M, Bowen, Alison J, Pullinger, Gillian D, Turner, Daniel J, Langridge, Gemma C, Turner, A Keith, Parkhill, Julian, Charles, Ian G, Maskell, Duncan J, Stevens, Mark P

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Proposal of serovars 17 and 18 of Actinobacillus pleuropneumoniae based on serological and genotypic analysis von Bossé, Janine T., Li, Yanwen, Sárközi, Rita, Fodor, László, Lacouture, Sonia, Gottschalk, Marcelo, Casas Amoribieta, Maria, Angen, Øystein, Nedbalcova, Katerina, Holden, Matthew T.G., Maskell, Duncan J., Tucker, Alexander W., Wren, Brendan W., Rycroft, Andrew N., Langford, Paul R.

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Modelling within-host spatiotemporal dynamics of invasive bacterial disease von Grant, Andrew J, Restif, Olivier, McKinley, Trevelyan J, Sheppard, Mark, Maskell, Duncan J, Mastroeni, Pietro

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Comprehensive identification of essential Staphylococcus aureus genes using Transposon-Mediated Differential Hybridisation (TMDH) von Chaudhuri, Roy R, Allen, Andrew G, Owen, Paul J, Shalom, Gil, Stone, Karl, Harrison, Marcus, Burgis, Timothy A, Lockyer, Michael, Garcia-Lara, Jorge, Foster, Simon J, Pleasance, Stephen J, Peters, Sarah E, Maskell, Duncan J, Charles, Ian G

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Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis von Weinert, Lucy A., Chaudhuri, Roy R., Wang, Jinhong, Peters, Sarah E., Corander, Jukka, Jombart, Thibaut, Baig, Abiyad, Howell, Kate J., Vehkala, Minna, Välimäki, Niko, Harris, David, Chieu, Tran Thi Bich, Van Vinh Chau, Nguyen, Campbell, James, Schultsz, Constance, Parkhill, Julian, Bentley, Stephen D., Langford, Paul R., Rycroft, Andrew N., Wren, Brendan W., Farrar, Jeremy, Baker, Stephen, Hoa, Ngo Thi, Holden, Matthew T.G., Tucker, Alexander W., Maskell, Duncan J.

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Attenuated Salmonella Typhimurium lacking the pathogenicity island-2 type 3 secretion system grow to high bacterial numbers inside phagocytes in mice von Grant, Andrew J, Morgan, Fiona J E, McKinley, Trevelyan J, Foster, Gemma L, Maskell, Duncan J, Mastroeni, Pietro

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Comparative sequence analysis of the capsular polysaccharide loci of Actinobacillus pleuropneumoniae serovars 1–18, and development of two multiplex PCRs for comprehensive capsule... von Bossé, Janine T., Li, Yanwen, Fernandez Crespo, Roberto, Lacouture, Sonia, Gottschalk, Marcelo, Sárközi, Rita, Fodor, László, Casas Amoribieta, Maria, Angen, Øystein, Nedbalcova, Katerina, Holden, Matthew T.G., Maskell, Duncan J., Tucker, Alexander W., Wren, Brendan W., Rycroft, Andrew N., Langford, Paul R.

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Large-scale genomic analysis of antimicrobial resistance in the zoonotic pathogen Streptococcus suis von Hadjirin, Nazreen F, Miller, Eric L, Murray, Gemma G R, Yen, Phung L K, Phuc, Ho D, Wileman, Thomas M, Hernandez-Garcia, Juan, Williamson, Susanna M, Parkhill, Julian, Maskell, Duncan J, Zhou, Rui, Fittipaldi, Nahuel, Gottschalk, Marcelo, Tucker, A W Dan, Hoa, Ngo Thi, Welch, John J, Weinert, Lucy A

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The effects of vaccination and immunity on bacterial infection dynamics in vivo von Coward, Chris, Restif, Olivier, Dybowski, Richard, Grant, Andrew J, Maskell, Duncan J, Mastroeni, Pietro

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HAM-ART: An optimised culture-free Hi-C metagenomics pipeline for tracking antimicrobial resistance genes in complex microbial communities von Kalmar, Lajos, Gupta, Srishti, Kean, Iain R L, Ba, Xiaoliang, Hadjirin, Nazreen, Lay, Elizabeth M, de Vries, Stefan P W, Bateman, Michael, Bartlet, Harriet, Hernandez-Garcia, Juan, Tucker, Alexander W, Restif, Olivier, Stevens, Mark P, Wood, James L N, Maskell, Duncan J, Grant, Andrew J, Holmes, Mark A

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Enterohemorrhagic Escherichia coli responds to gut microbiota metabolites by altering metabolism and activating stress responses von Vogt, Stefanie L., Serapio-Palacios, Antonio, Woodward, Sarah E., Santos, Andrew S., de Vries, Stefan P.W., Daigneault, Michelle C., Brandmeier, Lisa V., Grant, Andrew J., Maskell, Duncan J., Allen-Vercoe, Emma, Finlay, B. Brett

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Genomic evidence for the evolution of Streptococcus equi: host restriction, increased virulence, and genetic exchange with human pathogens von Holden, Matthew T G, Heather, Zoe, Paillot, Romain, Steward, Karen F, Webb, Katy, Ainslie, Fern, Jourdan, Thibaud, Bason, Nathalie C, Holroyd, Nancy E, Mungall, Karen, Quail, Michael A, Sanders, Mandy, Simmonds, Mark, Willey, David, Brooks, Karen, Aanensen, David M, Spratt, Brian G, Jolley, Keith A, Maiden, Martin C J, Kehoe, Michael, Chanter, Neil, Bentley, Stephen D, Robinson, Carl, Maskell, Duncan J, Parkhill, Julian, Waller, Andrew S

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Genome-wide fitness analyses of the foodborne pathogen Campylobacter jejuni in in vitro and in vivo models von de Vries, Stefan P., Gupta, Srishti, Baig, Abiyad, Wright, Elli, Wedley, Amy, Jensen, Annette Nygaard, Lora, Lizeth LaCharme, Humphrey, Suzanne, Skovgård, Henrik, Macleod, Kareen, Pont, Elsa, Wolanska, Dominika P., L’Heureux, Joanna, Mobegi, Fredrick M., Smith, David G. E., Everest, Paul, Zomer, Aldert, Williams, Nicola, Wigley, Paul, Humphrey, Thomas, Maskell, Duncan J., Grant, Andrew J.

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Defining the ABC of gene essentiality in streptococci von Charbonneau, Amelia R L, Forman, Oliver P, Cain, Amy K, Newland, Graham, Robinson, Carl, Boursnell, Mike, Parkhill, Julian, Leigh, James A, Maskell, Duncan J, Waller, Andrew S

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