The role of balanced training and testing data sets for binary classifiers in bioinformatics von Wei, Qiong, Dunbrack, Jr, Roland L

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Defining a new nomenclature for the structures of active and inactive kinases von Modi, Vivek, Dunbrack, Roland L.

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A New Clustering of Antibody CDR Loop Conformations von North, Benjamin, Lehmann, Andreas, Dunbrack, Roland L.

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A Smoothed Backbone-Dependent Rotamer Library for Proteins Derived from Adaptive Kernel Density Estimates and Regressions von Shapovalov, Maxim V., Dunbrack, Roland L.

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PDBrenum: A webserver and program providing Protein Data Bank files renumbered according to their UniProt sequences von Faezov, Bulat, Dunbrack, Roland L

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A Structurally-Validated Multiple Sequence Alignment of 497 Human Protein Kinase Domains von Modi, Vivek, Dunbrack, Roland L.

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RosettaAntibodyDesign (RAbD): A general framework for computational antibody design von Adolf-Bryfogle, Jared, Kalyuzhniy, Oleks, Kubitz, Michael, Weitzner, Brian D, Hu, Xiaozhen, Adachi, Yumiko, Schief, William R, Dunbrack, Jr, Roland L

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A new clustering and nomenclature for beta turns derived from high-resolution protein structures von Shapovalov, Maxim, Vucetic, Slobodan, Dunbrack, Jr, Roland L

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Kincore: a web resource for structural classification of protein kinases and their inhibitors von Modi, Vivek, Dunbrack, Roland L

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ProtCID: a data resource for structural information on protein interactions von Xu, Qifang, Dunbrack, Roland L.

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Improved prediction of protein side-chain conformations with SCWRL4 von Krivov, Georgii G., Shapovalov, Maxim V., Dunbrack Jr, Roland L.

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Modeling and docking of antibody structures with Rosetta von Weitzner, Brian D, Jeliazkov, Jeliazko R, Lyskov, Sergey, Marze, Nicholas, Kuroda, Daisuke, Frick, Rahel, Adolf-Bryfogle, Jared, Biswas, Naireeta, Dunbrack, Roland L, Gray, Jeffrey J

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The Rosetta All-Atom Energy Function for Macromolecular Modeling and Design von Alford, Rebecca F, Leaver-Fay, Andrew, Jeliazkov, Jeliazko R, O’Meara, Matthew J, DiMaio, Frank P, Park, Hahnbeom, Shapovalov, Maxim V, Renfrew, P. Douglas, Mulligan, Vikram K, Kappel, Kalli, Labonte, Jason W, Pacella, Michael S, Bonneau, Richard, Bradley, Philip, Dunbrack, Roland L, Das, Rhiju, Baker, David, Kuhlman, Brian, Kortemme, Tanja, Gray, Jeffrey J

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Multifaceted analysis of training and testing convolutional neural networks for protein secondary structure prediction von Shapovalov, Maxim, Dunbrack, Jr, Roland L, Vucetic, Slobodan

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Assessment of refinement of template-based models in CASP11 von Modi, Vivek, Dunbrack Jr, Roland L.

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The protein common assembly database (ProtCAD)-a comprehensive structural resource of protein complexes von Xu, Qifang, Dunbrack, Roland L

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Aurora A kinase (AURKA) in normal and pathological cell division von Nikonova, Anna S., Astsaturov, Igor, Serebriiskii, Ilya G., Dunbrack, Roland L., Golemis, Erica A.

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PyIgClassify: a database of antibody CDR structural classifications von Adolf-Bryfogle, Jared, Xu, Qifang, North, Benjamin, Lehmann, Andreas, Dunbrack, Jr, Roland L

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The PyRosetta Toolkit: a graphical user interface for the Rosetta software suite von Adolf-Bryfogle, Jared, Dunbrack, Jr, Roland L

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PISCES: a protein sequence culling server von Wang, Guoli, Dunbrack, Roland L.

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