Asphalt concrete modified by rubber crumbs in transport construction von Duhovny, G S, Karpenko, AV

Volltext

CombFold: predicting structures of large protein assemblies using a combinatorial assembly algorithm and AlphaFold2 von Shor, Ben, Schneidman-Duhovny, Dina

Volltext

A deep learning model for predicting optimal distance range in crosslinking mass spectrometry data von Cohen, Shon, Schneidman‐Duhovny, Dina

Volltext

PatchDock and SymmDock: servers for rigid and symmetric docking von Schneidman-Duhovny, Dina, Inbar, Yuval, Nussinov, Ruth, Wolfson, Haim J.

Volltext

ModBase, a database of annotated comparative protein structure models and associated resources von Pieper, Ursula, Webb, Benjamin M, Dong, Guang Qiang, Schneidman-Duhovny, Dina, Fan, Hao, Kim, Seung Joong, Khuri, Natalia, Spill, Yannick G, Weinkam, Patrick, Hammel, Michal, Tainer, John A, Nilges, Michael, Sali, Andrej

Volltext

Potent neutralizing nanobodies resist convergent circulating variants of SARS-CoV-2 by targeting diverse and conserved epitopes von Sun, Dapeng, Sang, Zhe, Kim, Yong Joon, Xiang, Yufei, Cohen, Tomer, Belford, Anna K., Huet, Alexis, Conway, James F., Sun, Ji, Taylor, Derek J., Schneidman-Duhovny, Dina, Zhang, Cheng, Huang, Wei, Shi, Yi

Volltext

Integrative modeling meets deep learning: Recent advances in modeling protein assemblies von Shor, Ben, Schneidman-Duhovny, Dina

Volltext

The SARS-CoV-2 Exerts a Distinctive Strategy for Interacting with the ACE2 Human Receptor von Brielle, Esther S, Schneidman-Duhovny, Dina, Linial, Michal

Volltext

CryptoSite: Expanding the Druggable Proteome by Characterization and Prediction of Cryptic Binding Sites von Cimermancic, Peter, Weinkam, Patrick, Rettenmaier, T. Justin, Bichmann, Leon, Keedy, Daniel A., Woldeyes, Rahel A., Schneidman-Duhovny, Dina, Demerdash, Omar N., Mitchell, Julie C., Wells, James A., Fraser, James S., Sali, Andrej

Volltext

Targeted in situ cross-linking mass spectrometry and integrative modeling reveal the architectures of three proteins from SARS-CoV-2 von Slavin, Moriya, Zamel, Joanna, Zohar, Keren, Eliyahu, Tsiona, Braitbard, Merav, Brielle, Esther, Baraz, Leah, Stolovich-Rain, Miri, Friedman, Ahuva, Wolf, Dana G., Rouvinski, Alexander, Linial, Michal, Schneidman-Duhovny, Dina, Kalisman, Nir

Volltext

NanoNet: Rapid and accurate end-to-end nanobody modeling by deep learning von Cohen, Tomer, Halfon, Matan, Schneidman-Duhovny, Dina

Volltext

Predicting CD4 T-cell epitopes based on antigen cleavage, MHCII presentation, and TCR recognition von Schneidman-Duhovny, Dina, Khuri, Natalia, Dong, Guang Qiang, Winter, Michael B, Shifrut, Eric, Friedman, Nir, Craik, Charles S, Pratt, Kathleen P, Paz, Pedro, Aswad, Fred, Sali, Andrej

Volltext

Novel Approach for Efficient Pharmacophore-Based Virtual Screening: Method and Applications von Dror, Oranit, Schneidman-Duhovny, Dina, Inbar, Yuval, Nussinov, Ruth, Wolfson, Haim J

Volltext

Uncertainty in integrative structural modeling von Schneidman-Duhovny, Dina, Pellarin, Riccardo, Sali, Andrej

Volltext

ScanNet: an interpretable geometric deep learning model for structure-based protein binding site prediction von Tubiana, Jérôme, Schneidman-Duhovny, Dina, Wolfson, Haim J.

Volltext

Modeling Structure and Dynamics of Protein Complexes with SAXS Profiles von Schneidman-Duhovny, Dina, Hammel, Michal

Volltext

Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment von Lensink, Marc F., Velankar, Sameer, Kryshtafovych, Andriy, Huang, Shen-You, Schneidman-Duhovny, Dina, Segura, Joan, Fernandez-Fuentes, Narcis, Viswanath, Shruthi, Elber, Ron, Grudinin, Sergei, Popov, Petr, Neveu, Emilie, Lee, Hasup, Baek, Minkyung, Park, Sangwoo, Heo, Lim, Rie Lee, Gyu, Seok, Chaok, Qin, Sanbo, Zhou, Huan-Xiang, Ritchie, David W., Maigret, Bernard, Devignes, Marie-Dominique, Ghoorah, Anisah, Torchala, Mieczyslaw, Chaleil, Raphaël A.G., Bates, Paul A., Ben-Zeev, Efrat, Eisenstein, Miriam, Negi, Surendra S., Weng, Zhiping, Vreven, Thom, Pierce, Brian G., Borrman, Tyler M., Yu, Jinchao, Ochsenbein, Françoise, Guerois, Raphaël, Vangone, Anna, Rodrigues, João P.G.L.M., van Zundert, Gydo, Nellen, Mehdi, Xue, Li, Karaca, Ezgi, Melquiond, Adrien S.J., Visscher, Koen, Kastritis, Panagiotis L., Bonvin, Alexandre M.J.J., Xu, Xianjin, Qiu, Liming, Yan, Chengfei, Li, Jilong, Ma, Zhiwei, Cheng, Jianlin, Zou, Xiaoqin, Shen, Yang, Peterson, Lenna X., Kim, Hyung-Rae, Roy, Amit, Han, Xusi, Esquivel-Rodriguez, Juan, Kihara, Daisuke, Yu, Xiaofeng, Bruce, Neil J., Fuller, Jonathan C., Wade, Rebecca C., Anishchenko, Ivan, Kundrotas, Petras J., Vakser, Ilya A., Imai, Kenichiro, Yamada, Kazunori, Oda, Toshiyuki, Nakamura, Tsukasa, Tomii, Kentaro, Pallara, Chiara, Romero-Durana, Miguel, Jiménez-García, Brian, Moal, Iain H., Férnandez-Recio, Juan, Joung, Jong Young, Kim, Jong Yun, Joo, Keehyoung, Lee, Jooyoung, Kozakov, Dima, Vajda, Sandor, Mottarella, Scott, Hall, David R., Beglov, Dmitri, Mamonov, Artem, Xia, Bing, Bohnuud, Tanggis, Del Carpio, Carlos A., Ichiishi, Eichiro, Marze, Nicholas, Kuroda, Daisuke, Gray, Jeffrey J., Chermak, Edrisse, Cavallo, Luigi, Oliva, Romina, Tovchigrechko, Andrey, Wodak, Shoshana J.

Volltext

Putting the pieces together: integrative modeling platform software for structure determination of macromolecular assemblies von Russel, Daniel, Lasker, Keren, Webb, Ben, Velázquez-Muriel, Javier, Tjioe, Elina, Schneidman-Duhovny, Dina, Peterson, Bret, Sali, Andrej

Volltext

FireDock: a web server for fast interaction refinement in molecular docking von Mashiach, Efrat, Schneidman-Duhovny, Dina, Andrusier, Nelly, Nussinov, Ruth, Wolfson, Haim J

Volltext

De novo STXBP1 mutation in a child with developmental delay and spasticity reveals a major structural alteration in the interface with syntaxin 1A von Banne, Ehud, Falik‐Zaccai, Tzipora, Brielle, Esther, Kalfon, Limor, Ladany, Hagay, Klinger, Danielle, Schneidman‐Duhovny, Dina, Linial, Michal

Volltext