Schmutzi: estimation of contamination and endogenous mitochondrial consensus calling for ancient DNA von Renaud, Gabriel, Slon, Viviane, Duggan, Ana T, Kelso, Janet

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The paradox of HBV evolution as revealed from a 16th century mummy von Patterson Ross, Zoe, Klunk, Jennifer, Fornaciari, Gino, Giuffra, Valentina, Duchêne, Sebastian, Duggan, Ana T, Poinar, Debi, Douglas, Mark W, Eden, John-Sebastian, Holmes, Edward C, Poinar, Hendrik N

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In silico analyses identify sequence contamination thresholds for Nanopore-generated SARS-CoV-2 sequences von Bolaji, Ayooluwa J, Duggan, Ana T

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SARS-CoV-2 infection and transmission in the North American deer mouse von Griffin, Bryan D., Chan, Mable, Tailor, Nikesh, Mendoza, Emelissa J., Leung, Anders, Warner, Bryce M., Duggan, Ana T., Moffat, Estella, He, Shihua, Garnett, Lauren, Tran, Kaylie N., Banadyga, Logan, Albietz, Alixandra, Tierney, Kevin, Audet, Jonathan, Bello, Alexander, Vendramelli, Robert, Boese, Amrit S., Fernando, Lisa, Lindsay, L. Robbin, Jardine, Claire M., Wood, Heidi, Poliquin, Guillaume, Strong, James E., Drebot, Michael, Safronetz, David, Embury-Hyatt, Carissa, Kobasa, Darwyn

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Optimizing extraction and targeted capture of ancient environmental DNA for reconstructing past environments using the PalaeoChip Arctic-1.0 bait-set von Murchie, Tyler J., Kuch, Melanie, Duggan, Ana T., Ledger, Marissa L., Roche, Kévin, Klunk, Jennifer, Karpinski, Emil, Hackenberger, Dirk, Sadoway, Tara, MacPhee, Ross, Froese, Duane, Poinar, Hendrik

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17th Century Variola Virus Reveals the Recent History of Smallpox von Duggan, Ana T., Perdomo, Maria F., Piombino-Mascali, Dario, Marciniak, Stephanie, Poinar, Debi, Emery, Matthew V., Buchmann, Jan P., Duchêne, Sebastian, Jankauskas, Rimantas, Humphreys, Margaret, Golding, G. Brian, Southon, John, Devault, Alison, Rouillard, Jean-Marie, Sahl, Jason W., Dutour, Olivier, Hedman, Klaus, Sajantila, Antti, Smith, Geoffrey L., Holmes, Edward C., Poinar, Hendrik N.

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Response to Brinkmann et al. "Re-assembly of 19th century smallpox vaccine genomes reveals the contemporaneous use of horsepox and horsepox-related viruses in the United States" von Duggan, Ana T, Holmes, Edward C, Poinar, Hendrik N

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A 14th century CE Brucella melitensis genome and the recent expansion of the Western Mediterranean clade von Long, George S, Hider, Jessica, Duggan, Ana T, Klunk, Jennifer, Eaton, Katherine, Karpinski, Emil, Giuffra, Valentina, Ventura, Luca, Prowse, Tracy L, Fornaciari, Antonio, Fornaciari, Gino, Holmes, Edward C, Golding, G Brian, Poinar, Hendrik N

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Plasmodium falciparum malaria in 1st–2nd century CE southern Italy von Marciniak, Stephanie, Prowse, Tracy L., Herring, D. Ann, Klunk, Jennifer, Kuch, Melanie, Duggan, Ana T., Bondioli, Luca, Holmes, Edward C., Poinar, Hendrik N.

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Ancient Clostridium DNA and variants of tetanus neurotoxins associated with human archaeological remains von Hodgins, Harold P., Chen, Pengsheng, Lobb, Briallen, Wei, Xin, Tremblay, Benjamin J. M., Mansfield, Michael J., Lee, Victoria C. Y., Lee, Pyung-Gang, Coffin, Jeffrey, Duggan, Ana T., Dolphin, Alexis E., Renaud, Gabriel, Dong, Min, Doxey, Andrew C.

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Recent developments in the genetic history of East Asia and Oceania von Duggan, Ana T, Stoneking, Mark

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Pleistocene mitogenomes reconstructed from the environmental DNA of permafrost sediments von Murchie, Tyler J., Karpinski, Emil, Eaton, Katherine, Duggan, Ana T., Baleka, Sina, Zazula, Grant, MacPhee, Ross D.E., Froese, Duane, Poinar, Hendrik N.

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Comment: Characterization of Two Historic Smallpox Specimens from a Czech Museum von Porter, Ashleigh F, Duggan, Ana T, Poinar, Hendrik N, Holmes, Edward C

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Investigating the prehistory of Tungusic peoples of Siberia and the Amur-Ussuri region with complete mtDNA genome sequences and Y-chromosomal markers von Duggan, Ana T, Whitten, Mark, Wiebe, Victor, Crawford, Michael, Butthof, Anne, Spitsyn, Victor, Makarov, Sergey, Novgorodov, Innokentiy, Osakovsky, Vladimir, Pakendorf, Brigitte

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The origins and genomic diversity of American Civil War Era smallpox vaccine strains von Duggan, Ana T, Klunk, Jennifer, Porter, Ashleigh F, Dhody, Anna N, Hicks, Robert, Smith, Geoffrey L, Humphreys, Margaret, McCollum, Andrea M, Davidson, Whitni B, Wilkins, Kimberly, Li, Yu, Burke, Amanda, Polasky, Hanna, Flanders, Lowell, Poinar, Debi, Raphenya, Amogelang R, Lau, Tammy T Y, Alcock, Brian, McArthur, Andrew G, Golding, G Brian, Holmes, Edward C, Poinar, Hendrik N

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Maternal History of Oceania from Complete mtDNA Genomes: Contrasting Ancient Diversity with Recent Homogenization Due to the Austronesian Expansion von Duggan, Ana T., Evans, Bethwyn, Friedlaender, Françoise R., Friedlaender, Jonathan S., Koki, George, Merriwether, D. Andrew, Kayser, Manfred, Stoneking, Mark

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A Highly Unstable Recent Mutation in Human mtDNA von Duggan, Ana T., Stoneking, Mark

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Smallpox's antiquity in doubt von Newfield, Timothy P., Duggan, Ana T., Poinar, Hendrik

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Resolving the phylogenetic position of Darwin's extinct ground sloth (Mylodon darwinii) using mitogenomic and nuclear exon data von Delsuc, Frédéric, Kuch, Melanie, Gibb, Gillian C., Hughes, Jonathan, Szpak, Paul, Southon, John, Enk, Jacob, Duggan, Ana T., Poinar, Hendrik N.

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The Gateway from Near into Remote Oceania: New Insights from Genome-Wide Data von Pugach, Irina, Duggan, Ana T, Merriwether, D Andrew, Friedlaender, Françoise R, Friedlaender, Jonathan S, Stoneking, Mark

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