Nosocomial Outbreak of SARS-CoV-2 in a "Non-COVID-19" Hospital Ward: Virus Genome Sequencing as a Key Tool to Understand Cryptic Transmission von Borges, Vítor, Isidro, Joana, Macedo, Filipe, Neves, José, Silva, Luís, Paiva, Mário, Barata, José, Catarino, Judite, Ciobanu, Liliana, Duarte, Sílvia, Vieira, Luís, Guiomar, Raquel, Gomes, João Paulo

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Dissecting whole-genome sequencing-based online tools for predicting resistance in Mycobacterium tuberculosis: can we use them for clinical decision guidance? von Macedo, Rita, Nunes, Alexandra, Portugal, Isabel, Duarte, Sílvia, Vieira, Luís, Gomes, João Paulo

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Comparative Effectiveness of COVID-19 Vaccines in Preventing Infections and Disease Progression from SARS-CoV-2 Omicron BA.5 and BA.2, Portugal von Kislaya, Irina, Casaca, Pedro, Borges, Vítor, Sousa, Carlos, Ferreira, Bibiana I, Fonte, Ana, Fernandes, Eugénia, Dias, Carlos Matias, Duarte, Sílvia, Almeida, José Pedro, Grenho, Inês, Coelho, Luís, Ferreira, Rita, Ferreira, Patrícia Pita, Borges, Cláudia Medeiros, Isidro, Joana, Pinto, Miguel, Menezes, Luís, Sobral, Daniel, Nunes, Alexandra, Santos, Daniela, Gonçalves, António Maia, Vieira, Luís, Gomes, João Paulo, Leite, Pedro Pinto, Nunes, Baltazar, Machado, Ausenda, Peralta-Santos, André

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Benchmarks and sediment source(s) of the 1755 Lisbon tsunami deposit at Boca do Rio Estuary von Font, Eric, Veiga-Pires, Cristina, Pozo, Manuel, Nave, Sílvia, Costas, Susana, Ruiz Muñoz, Francisco, Abad, Manuel, Simões, Nuno, Duarte, Sílvia, Rodríguez-Vidal, Joaquín

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Long-Term Evolution of SARS-CoV-2 in an Immunocompromised Patient with Non-Hodgkin Lymphoma von Borges, Vítor, Isidro, Joana, Cunha, Mário, Cochicho, Daniela, Martins, Luís, Banha, Luís, Figueiredo, Margarida, Rebelo, Leonor, Trindade, Maria Céu, Duarte, Sílvia, Vieira, Luís, Alves, Maria João, Costa, Inês, Guiomar, Raquel, Santos, Madalena, Cortê-Real, Rita, Dias, André, Póvoas, Diana, Cabo, João, Figueiredo, Carlos, Manata, Maria José, Maltez, Fernando, Gomes da Silva, Maria, Gomes, João Paulo

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Molecular Capture of Mycobacterium tuberculosis Genomes Directly from Clinical Samples: A Potential Backup Approach for Epidemiological and Drug Susceptibility Inferences von Macedo, Rita, Isidro, Joana, Ferreira, Rita, Pinto, Miguel, Borges, Vítor, Duarte, Sílvia, Vieira, Luís, Gomes, João Paulo

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Bacterial persisters are a stochastically formed subpopulation of low-energy cells von Manuse, Sylvie, Shan, Yue, Canas-Duarte, Silvia J, Bakshi, Somenath, Sun, Wei-Sheng, Mori, Hirotada, Paulsson, Johan, Lewis, Kim

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Cryptic Prophages Contribution for Campylobacter jejuni and Campylobacter coli Introgression von Tanoeiro, Luís, Oleastro, Mónica, Nunes, Alexandra, Marques, Andreia T, Duarte, Sílvia Vaz, Gomes, João Paulo, Matos, António Pedro Alves, Vítor, Jorge M B, Vale, Filipa F

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Novel protocol for persister cells isolation von Cañas-Duarte, Silvia J, Restrepo, Silvia, Pedraza, Juan Manuel

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Phylogenomic characterization and signs of microevolution in the 2022 multi-country outbreak of monkeypox virus von Isidro, Joana, Borges, Vítor, Pinto, Miguel, Sobral, Daniel, Santos, João Dourado, Nunes, Alexandra, Mixão, Verónica, Ferreira, Rita, Santos, Daniela, Duarte, Silvia, Vieira, Luís, Borrego, Maria José, Núncio, Sofia, de Carvalho, Isabel Lopes, Pelerito, Ana, Cordeiro, Rita, Gomes, João Paulo

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Evolutionary Origins of Rhizarian Parasites von Sierra, Roberto, Cañas-Duarte, Silvia J., Burki, Fabien, Schwelm, Arne, Fogelqvist, Johan, Dixelius, Christina, González-García, Laura N., Gile, Gillian H., Slamovits, Claudio H., Klopp, Christophe, Restrepo, Silvia, Arzul, Isabelle, Pawlowski, Jan

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Draft Genome Sequence of an Escherichia coli Strain Isolated from a Gallus gallus Broiler Producing the Novel CTX-M-166 Variant von Manageiro, Vera, Clemente, Lurdes, Duarte, Sílvia, Vieira, Luís, Caniça, Manuela

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Comparative analysis on natural spawning of F1 meagre, Argyrosomus regius, with wild broodstock spawns in Portugal von Soares, Florbela, Ribeiro, Laura, Gamboa, Margarida, Duarte, Sílvia, Mendes, Ana Candeias, Castanho, Sara, Barata, Marisa, Lourenço, Tânia Margarida, Pousão-Ferreira, Pedro

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Mutation rate of SARS-CoV-2 and emergence of mutators during experimental evolution von Amicone, Massimo, Borges, Vítor, Alves, Maria João, Isidro, Joana, Zé-Zé, Líbia, Duarte, Sílvia, Vieira, Luís, Guiomar, Raquel, Gomes, João Paulo, Gordo, Isabel

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Strengthening the genomic surveillance of Francisella tularensis by using culture-free whole-genome sequencing from biological samples von Isidro, Joana, Escudero, Raquel, Luque-Larena, Juan José, Pinto, Miguel, Borges, Vítor, González-Martín-Niño, Rosa, Duarte, Sílvia, Vieira, Luís, Mougeot, François, Vidal, Dolors, Herrera-Rodríguez, Daniel, Rodríguez-Pastor, Ruth, Herrero-Cófreces, Silvia, Jubete-Tazo, Fernando, Gomes, João Paulo, Lopes de Carvalho, Isabel

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Tracking bacterial lineages in complex and dynamic environments with applications for growth control and persistence von Bakshi, Somenath, Leoncini, Emanuele, Baker, Charles, Cañas-Duarte, Silvia J., Okumus, Burak, Paulsson, Johan

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Tracking SARS-CoV-2 lineage B.1.1.7 dissemination: insights from nationwide spike gene target failure (SGTF) and spike gene late detection (SGTL) data, Portugal, week 49 2020 to we... von Borges, Vítor, Sousa, Carlos, Menezes, Luís, Gonçalves, António Maia, Picão, Miguel, Almeida, José Pedro, Vieita, Margarida, Santos, Rafael, Silva, Ana Rita, Costa, Mariana, Carneiro, Luís, Casaca, Pedro, Pinto-Leite, Pedro, Peralta-Santos, André, Isidro, Joana, Duarte, Sílvia, Vieira, Luís, Guiomar, Raquel, Silva, Susana, Nunes, Baltazar, Gomes, João P

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Genome-Scale Characterization of Mycobacterium abscessus Complex Isolates from Portugal von Carneiro, Sofia, Pinto, Miguel, Silva, Sónia, Santos, Andrea, Rodrigues, Irene, Santos, Daniela, Duarte, Sílvia, Vieira, Luís, Gomes, João Paulo, Macedo, Rita

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Addendum: Phylogenomic characterization and signs of microevolution in the 2022 multi-country outbreak of monkeypox virus von Isidro, Joana, Borges, Vítor, Pinto, Miguel, Sobral, Daniel, Santos, João Dourado, Nunes, Alexandra, Mixão, Verónica, Ferreira, Rita, Santos, Daniela, Duarte, Silvia, Vieira, Luís, Borrego, Maria José, Núncio, Sofia, de Carvalho, Isabel Lopes, Pelerito, Ana, Cordeiro, Rita, Gomes, João Paulo

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Hyperbaric Medicine in Pediatrics — reality of a Portuguese reference center von Freitas, Catarina, Salazar, Luís, Duarte-Costa, Sílvia, Fraga, Catarina, Monteiro, Sara, Camacho, Óscar

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