Predicting RNA-protein interactions using only sequence information von Muppirala, Usha K, Honavar, Vasant G, Dobbs, Drena

Volltext

Computational prediction of protein interfaces: A review of data driven methods von Xue, Li C., Dobbs, Drena, Bonvin, Alexandre M.J.J., Honavar, Vasant

Volltext

HomPPI: a class of sequence homology based protein-protein interface prediction methods von Xue, Li C, Dobbs, Drena, Honavar, Vasant

Volltext

Efficient targeted integration directed by short homology in zebrafish and mammalian cells von Wierson, Wesley A., Welker, Jordan M., Almeida, Maira P., Mann, Carla M., Webster, Dennis A., Torrie, Melanie E., Weiss, Trevor J., Kambakam, Sekhar, Vollbrecht, Macy K., Lan, Merrina, McKeighan, Kenna C., Levey, Jacklyn, Ming, Zhitao, Wehmeier, Alec, Mikelson, Christopher S., Haltom, Jeffrey A., Kwan, Kristen M., Chi-Bin Chien, Balciunas, Darius, Ekker, Stephen C., Clark, Karl J., Webber, Beau R., Moriarity, Branden S., Solin, Stacy L., Carlson, Daniel F., Dobbs, Drena L., McGrail, Maura, Essner, Jeffrey

Volltext

Predicting linear B-cell epitopes using string kernels von EL-Manzalawy, Yasser, Dobbs, Drena, Honavar, Vasant

Volltext

Predicting protein-protein interface residues using local surface structural similarity von Jordan, Rafael A, El-Manzalawy, Yasser, Dobbs, Drena, Honavar, Vasant

Volltext

RNABindRPlus: a predictor that combines machine learning and sequence homology-based methods to improve the reliability of predicted RNA-binding residues in proteins von Walia, Rasna R, Xue, Li C, Wilkins, Katherine, El-Manzalawy, Yasser, Dobbs, Drena, Honavar, Vasant

Volltext

Glycosylation site prediction using ensembles of Support Vector Machine classifiers von Caragea, Cornelia, Sinapov, Jivko, Silvescu, Adrian, Dobbs, Drena, Honavar, Vasant

Volltext

High frequency targeted mutagenesis in Arabidopsis thaliana using zinc finger nucleases von Zhang, Feng, Maeder, Morgan L., Unger-Wallace, Erica, Hoshaw, Justin P., Reyon, Deepak, Christian, Michelle, Li, Xiaohong, Pierick, Christopher J., Dobbs, Drena, Peterson, Thomas, Joung, J. Keith, Voytas, Daniel F., Ecker, Joseph R.

Volltext

Protein-RNA interface residue prediction using machine learning: an assessment of the state of the art von Walia, Rasna R, Caragea, Cornelia, Lewis, Benjamin A, Towfic, Fadi, Terribilini, Michael, El-Manzalawy, Yasser, Dobbs, Drena, Honavar, Vasant

Volltext

GeneWeld: Efficient Targeted Integration Directed by Short Homology in Zebrafish von Welker, Jordan M, Wierson, Wesley A, Almeida, Maira P, Mann, Carla M, Torrie, Melanie E, Ming, Zhitao, Ekker, Stephen C, Clark, Karl J, Dobbs, Drena L, Essner, Jeffrey J, McGrail, Maura

Volltext

Robust activation of microhomology-mediated end joining for precision gene editing applications von Ata, Hirotaka, Ekstrom, Thomas L, Martínez-Gálvez, Gabriel, Mann, Carla M, Dvornikov, Alexey V, Schaefbauer, Kyle J, Ma, Alvin C, Dobbs, Drena, Clark, Karl J, Ekker, Stephen C

Volltext

Selection-free zinc-finger-nuclease engineering by context-dependent assembly (CoDA) von Joung, J Keith, Sander, Jeffry D, Dahlborg, Elizabeth J, Goodwin, Mathew J, Cade, Lindsay, Zhang, Feng, Cifuentes, Daniel, Curtin, Shaun J, Blackburn, Jessica S, Thibodeau-Beganny, Stacey, Qi, Yiping, Pierick, Christopher J, Hoffman, Ellen, Maeder, Morgan L, Khayter, Cyd, Reyon, Deepak, Dobbs, Drena, Langenau, David M, Stupar, Robert M, Giraldez, Antonio J, Voytas, Daniel F, Peterson, Randall T, Yeh, Jing-Ruey J

Volltext

Rapid “Open-Source” Engineering of Customized Zinc-Finger Nucleases for Highly Efficient Gene Modification von Maeder, Morgan L., Thibodeau-Beganny, Stacey, Osiak, Anna, Wright, David A., Anthony, Reshma M., Eichtinger, Magdalena, Jiang, Tao, Foley, Jonathan E., Winfrey, Ronnie J., Townsend, Jeffrey A., Unger-Wallace, Erica, Sander, Jeffry D., Müller-Lerch, Felix, Fu, Fengli, Pearlberg, Joseph, Göbel, Carl, Dassie, Justin P., Pruett-Miller, Shondra M., Porteus, Matthew H., Sgroi, Dennis C., Iafrate, A. John, Dobbs, Drena, McCray, Paul B., Cathomen, Toni, Voytas, Daniel F., Joung, J. Keith

Volltext

Predicting DNA-binding sites of proteins from amino acid sequence von Yan, Changhui, Terribilini, Michael, Wu, Feihong, Jernigan, Robert L, Dobbs, Drena, Honavar, Vasant

Volltext

A Plasmodium-like virulence effector of the soybean cyst nematode suppresses plant innate immunity von Noon, Jason B., Qi, Mingsheng, Sill, Danielle N., Muppirala, Usha, Eves‐van den Akker, Sebastian, Maier, Thomas R., Dobbs, Drena, Mitchum, Melissa G., Hewezi, Tarek, Baum, Thomas J.

Volltext

Prediction of RNA binding sites in proteins from amino acid sequence von Terribilini, Michael, Lee, Jae-Hyung, Yan, Changhui, Jernigan, Robert L, Honavar, Vasant, Dobbs, Drena

Volltext

On evaluating MHC-II binding peptide prediction methods von El-Manzalawy, Yasser, Dobbs, Drena, Honavar, Vasant

Volltext

Characterization of Protein–Protein Interfaces von Yan, Changhui, Wu, Feihong, Jernigan, Robert L., Dobbs, Drena, Honavar, Vasant

Volltext

Standardized reagents and protocols for engineering zinc finger nucleases by modular assembly von Joung, J Keith, Wright, David A, Thibodeau-Beganny, Stacey, Sander, Jeffry D, Winfrey, Ronnie J, Hirsh, Andrew S, Eichtinger, Magdalena, Fu, Fengli, Porteus, Matthew H, Dobbs, Drena, Voytas, Daniel F

Volltext