SBOannotator: a Python Tool for the Automated Assignment of Systems Biology Ontology Terms von Leonidou, Nantia, Fritze, Elisabeth, Renz, Alina, Dräger, Andreas

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Genome-Scale Metabolic Modeling of Escherichia coli and Its Chassis Design for Synthetic Biology Applications von Mienda, Bashir Sajo, Dräger, Andreas

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Escher: A Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Biological Pathways von King, Zachary A, Dräger, Andreas, Ebrahim, Ali, Sonnenschein, Nikolaus, Lewis, Nathan E, Palsson, Bernhard O

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Recon3D enables a three-dimensional view of gene variation in human metabolism von Brunk, Elizabeth, Sahoo, Swagatika, Zielinski, Daniel C, Altunkaya, Ali, Dräger, Andreas, Mih, Nathan, Gatto, Francesco, Nilsson, Avlant, Preciat Gonzalez, German Andres, Aurich, Maike Kathrin, Prlić, Andreas, Sastry, Anand, Danielsdottir, Anna D, Heinken, Almut, Noronha, Alberto, Rose, Peter W, Burley, Stephen K, Fleming, Ronan M T, Nielsen, Jens, Thiele, Ines, Palsson, Bernhard O

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The systems biology simulation core library von Panchiwala, Hemil, Shah, Shalin, Planatscher, Hannes, Zakharchuk, Mykola, König, Matthias, Dräger, Andreas

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Harmonizing semantic annotations for computational models in biology von Neal, Maxwell Lewis, König, Matthias, Nickerson, David, Mısırlı, Göksel, Kalbasi, Reza, Dräger, Andreas, Atalag, Koray, Chelliah, Vijayalakshmi, Cooling, Michael T, Cook, Daniel L, Crook, Sharon, de Alba, Miguel, Friedman, Samuel H, Garny, Alan, Gennari, John H, Gleeson, Padraig, Golebiewski, Martin, Hucka, Michael, Juty, Nick, Myers, Chris, Olivier, Brett G, Sauro, Herbert M, Scharm, Martin, Snoep, Jacky L, Touré, Vasundra, Wipat, Anil, Wolkenhauer, Olaf, Waltemath, Dagmar

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An updated genome-scale metabolic network reconstruction of Pseudomonas aeruginosa PA14 to characterize mucin-driven shifts in bacterial metabolism von Payne, Dawson D., Renz, Alina, Dunphy, Laura J., Lewis, Taylor, Dräger, Andreas, Papin, Jason A.

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SBMLsqueezer 2: context-sensitive creation of kinetic equations in biochemical networks von Dräger, Andreas, Zielinski, Daniel C, Keller, Roland, Rall, Matthias, Eichner, Johannes, Palsson, Bernhard O, Zell, Andreas

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Evaluation of rate law approximations in bottom-up kinetic models of metabolism von Du, Bin, Zielinski, Daniel C, Kavvas, Erol S, Dräger, Andreas, Tan, Justin, Zhang, Zhen, Ruggiero, Kayla E, Arzumanyan, Garri A, Palsson, Bernhard O

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KEGGtranslator: visualizing and converting the KEGG PATHWAY database to various formats von Wrzodek, Clemens, Dräger, Andreas, Zell, Andreas

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SBMLsqueezer: a CellDesigner plug-in to generate kinetic rate equations for biochemical networks von Dräger, Andreas, Hassis, Nadine, Supper, Jochen, Schröder, Adrian, Zell, Andreas

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New workflow predicts drug targets against SARS-CoV-2 via metabolic changes in infected cells von Leonidou, Nantia, Renz, Alina, Mostolizadeh, Reihaneh, Dräger, Andreas

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SBMLSimulator: A Java Tool for Model Simulation and Parameter Estimation in Systems Biology von Dörr, Alexander, Keller, Roland, Zell, Andreas, Dräger, Andreas

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Genome-Scale Metabolic Model of Infection with SARS-CoV-2 Mutants Confirms Guanylate Kinase as Robust Potential Antiviral Target von Renz , Alina, Widerspick , Lina, Dräger , Andreas

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Systematic discovery of uncharacterized transcription factors in Escherichia coli K-12 MG1655 von Gao, Ye, Yurkovich, James T, Seo, Sang Woo, Kabimoldayev, Ilyas, Dräger, Andreas, Chen, Ke, Sastry, Anand V, Fang, Xin, Mih, Nathan, Yang, Laurence, Eichner, Johannes, Cho, Byung-Kwan, Kim, Donghyuk, Palsson, Bernhard O

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Towards the human nasal microbiome: Simulating D. pigrum and S. aureus von Mostolizadeh, Reihaneh, Glöckler, Manuel, Dräger, Andreas

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Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model Definitions von Hucka, Michael, Bergmann, Frank T., Dräger, Andreas, Hoops, Stefan, Keating, Sarah M., Le Novère, Nicolas, Myers, Chris J., Olivier, Brett G., Sahle, Sven, Schaff, James C., Smith, Lucian P., Waltemath, Dagmar, Wilkinson, Darren J.

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Community standards to facilitate development and address challenges in metabolic modeling von Carey, Maureen A, Dräger, Andreas, Beber, Moritz E, Papin, Jason A, Yurkovich, James T

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High-Quality Genome-Scale Reconstruction of Corynebacterium glutamicum ATCC 13032 von Feierabend, Martina, Renz, Alina, Zelle, Elisabeth, Nöh, Katharina, Wiechert, Wolfgang, Dräger, Andreas

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Computational Model Informs Effective Control Interventions against Y. enterocolitica Co-Infection von Mostolizadeh, Reihaneh, Dräger, Andreas

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