Uncertainty in the Timing of Origin of Animals and the Limits of Precision in Molecular Timescales von dos Reis, Mario, Thawornwattana, Yuttapong, Angelis, Konstantinos, Telford, Maximilian J., Donoghue, Philip C.J., Yang, Ziheng

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Solving the riddle of codon usage preferences: a test for translational selection von Reis, Mario dos, Savva, Renos, Wernisch, Lorenz

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The unbearable uncertainty of Bayesian divergence time estimation von DOS REIS, Mario, YANG, Ziheng

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The impact of ancestral population size and incomplete lineage sorting on Bayesian estimation of species divergence times von Angelis, Konstantinos, Dos Reis, Mario

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Characterization of the Uncertainty of Divergence Time Estimation under Relaxed Molecular Clock Models Using Multiple Loci von Zhu, Tianqi, Dos Reis, Mario, Yang, Ziheng

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The Impact of the Rate Prior on Bayesian Estimation of Divergence Times with Multiple Loci von Dos Reis, Mario, Zhu, Tianqi, Yang, Ziheng

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Approximate Likelihood Calculation on a Phylogeny for Bayesian Estimation of Divergence Times von Reis, Mario dos, Yang, Ziheng

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Using Phylogenomic Data to Explore the Effects of Relaxed Clocks and Calibration Strategies on Divergence Time Estimation: Primates as a Test Case von dos Reis, Mario, Gunnell, Gregg F., Barba-Montoya, Jose, Wilkins, Alex, Yang, Ziheng, Yoder, Anne D.

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Constraining uncertainty in the timescale of angiosperm evolution and the veracity of a Cretaceous Terrestrial Revolution von Barba‐Montoya, Jose, Reis, Mario, Schneider, Harald, Donoghue, Philip C. J., Yang, Ziheng

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A species-level timeline of mammal evolution integrating phylogenomic data von Álvarez-Carretero, Sandra, Tamuri, Asif U., Battini, Matteo, Nascimento, Fabrícia F., Carlisle, Emily, Asher, Robert J., Yang, Ziheng, Donoghue, Philip C. J., dos Reis, Mario

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Comparison of different strategies for using fossil calibrations to generate the time prior in Bayesian molecular clock dating von Barba-Montoya, Jose, dos Reis, Mario, Yang, Ziheng

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Phylogenomic Resolution of the Cetacean Tree of Life Using Target Sequence Capture von McGowen, Michael R., Tsagkogeorga, Georgia, Álvarez-Carretero, Sandra, dos Reis, Mario, Struebig, Monika, Deaville, Robert, Jepson, Paul D., Jarman, Simon, Polanowski, Andrea, Morin, Phillip A., Rossiter, Stephen J.

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Phylogenomics reveals the evolutionary timing and pattern of butterflies and moths von Kawahara, Akito Y., Plotkin, David, Espeland, Marianne, Meusemann, Karen, Toussaint, Emmanuel F. A., Donath, Alexander, Gimnich, France, Frandsen, Paul B., Zwick, Andreas, dos Reis, Mario, Barber, Jesse R., Peters, Ralph S., Liu, Shanlin, Zhou, Xin, Mayer, Christoph, Podsiadlowski, Lars, Storer, Caroline, Yack, Jayne E., Misof, Bernhard, Breinholt, Jesse W.

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A Mutation–Selection Model of Protein Evolution under Persistent Positive Selection von Tamuri, Asif U, dos Reis, Mario

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A biologist’s guide to Bayesian phylogenetic analysis von Nascimento, Fabrícia F., Reis, Mario dos, Yang, Ziheng

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Phylogenomic datasets provide both precision and accuracy in estimating the timescale of placental mammal phylogeny von dos Reis, Mario, Inoue, Jun, Hasegawa, Masami, Asher, Robert J., Donoghue, Philip C. J., Yang, Ziheng

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A Beginners Guide to Estimating the Non-synonymous to Synonymous Rate Ratio of all Protein-Coding Genes in a Genome von Jeffares, Daniel C., Tomiczek, Bartłomiej, Sojo, Victor, dos Reis, Mario

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Identifying changes in selective constraints: host shifts in influenza von Tamuri, Asif U, Dos Reis, Mario, Hay, Alan J, Goldstein, Richard A

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An Evaluation of Different Partitioning Strategies for Bayesian Estimation of Species Divergence Times von Angelis, Konstantinos, Álvarez-Carretero, Sandra, Dos Reis, Mario, Yang, Ziheng

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Dire wolves were the last of an ancient New World canid lineage von Perri, Angela R., Mitchell, Kieren J., Mouton, Alice, Álvarez-Carretero, Sandra, Hulme-Beaman, Ardern, Haile, James, Jamieson, Alexandra, Meachen, Julie, Lin, Audrey T., Schubert, Blaine W., Ameen, Carly, Antipina, Ekaterina E., Bover, Pere, Brace, Selina, Carmagnini, Alberto, Carøe, Christian, Samaniego Castruita, Jose A., Chatters, James C., Dobney, Keith, dos Reis, Mario, Evin, Allowen, Gaubert, Philippe, Gopalakrishnan, Shyam, Gower, Graham, Heiniger, Holly, Helgen, Kristofer M., Kapp, Josh, Kosintsev, Pavel A., Linderholm, Anna, Ozga, Andrew T., Presslee, Samantha, Salis, Alexander T., Saremi, Nedda F., Shew, Colin, Skerry, Katherine, Taranenko, Dmitry E., Thompson, Mary, Sablin, Mikhail V., Kuzmin, Yaroslav V., Collins, Matthew J., Sinding, Mikkel-Holger S., Gilbert, M. Thomas P., Stone, Anne C., Shapiro, Beth, Van Valkenburgh, Blaire, Wayne, Robert K., Larson, Greger, Cooper, Alan, Frantz, Laurent A. F.

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