Intrinsic dynamics is evolutionarily optimized to enable allosteric behavior von Zhang, Yan, Doruker, Pemra, Kaynak, Burak, Zhang, She, Krieger, James, Li, Hongchun, Bahar, Ivet

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Ligand Docking to Intermediate and Close-To-Bound Conformers Generated by an Elastic Network Model Based Algorithm for Highly Flexible Proteins von Kurkcuoglu, Zeynep, Doruker, Pemra

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ClustENM: ENM-Based Sampling of Essential Conformational Space at Full Atomic Resolution von Kurkcuoglu, Zeynep, Bahar, Ivet, Doruker, Pemra

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Correction: Ligand Docking to Intermediate and Close-To-Bound Conformers Generated by an Elastic Network Model Based Algorithm for Highly Flexible Proteins von Kurkcuoglu, Zeynep, Doruker, Pemra

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Essential site scanning analysis: A new approach for detecting sites that modulate the dispersion of protein global motions von Kaynak, Burak T., Bahar, Ivet, Doruker, Pemra

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Allosteric interactions in the parathyroid hormone GPCR–arrestin complex formation von Clark, Lisa J., Krieger, James, White, Alex D., Bondarenko, Vasyl, Lei, Saifei, Fang, Fei, Lee, Ji Young, Doruker, Pemra, Böttke, Thore, Jean-Alphonse, Frederic, Tang, Pei, Gardella, Thomas J., Xiao, Kunhong, Sutkeviciute, Ieva, Coin, Irene, Bahar, Ivet, Vilardaga, Jean-Pierre

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Precise druggability of the PTH type 1 receptor von Sutkeviciute, Ieva, Lee, Ji Young, White, Alex D., Maria, Christian Santa, Peña, Karina A., Savransky, Sofya, Doruker, Pemra, Li, Hongchun, Lei, Saifei, Kaynak, Burak, Tu, Chialing, Clark, Lisa J., Sanker, Subramaniam, Gardella, Thomas J., Chang, Wenhan, Bahar, Ivet, Vilardaga, Jean-Pierre

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Coupling between catalytic loop motions and enzyme global dynamics von Kurkcuoglu, Zeynep, Bakan, Ahmet, Kocaman, Duygu, Bahar, Ivet, Doruker, Pemra

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Conformational dynamics of bacterial trigger factor in apo and ribosome-bound states von Can, Mehmet Tarik, Kurkcuoglu, Zeynep, Ezeroglu, Gokce, Uyar, Arzu, Kurkcuoglu, Ozge, Doruker, Pemra

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Editorial: Understanding Protein Dynamics, Binding and Allostery for Drug Design von Hu, Guang, Doruker, Pemra, Li, Hongchun, Demet Akten, Ebru

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Dynamics of large proteins through hierarchical levels of coarse-grained structures von Doruker, Pemra, Jernigan, Robert L., Bahar, Ivet

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Sampling of Protein Conformational Space Using Hybrid Simulations: A Critical Assessment of Recent Methods von Kaynak, Burak T, Krieger, James M, Dudas, Balint, Dahmani, Zakaria L, Costa, Mauricio G S, Balog, Erika, Scott, Ana Ligia, Doruker, Pemra, Perahia, David, Bahar, Ivet

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Activation and Speciation Mechanisms in Class A GPCRs von Wingert, Bentley, Doruker, Pemra, Bahar, Ivet

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Substrate Effect on Catalytic Loop and Global Dynamics of Triosephosphate Isomerase von Kurkcuoglu, Zeynep, Doruker, Pemra

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Functional Motions of Influenza Virus Hemagglutinin: A Structure-Based Analytical Approach von Isin, Basak, Doruker, Pemra, Bahar, Ivet

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The ribosome structure controls and directs mRNA entry, translocation and exit dynamics von Kurkcuoglu, Ozge, Doruker, Pemra, Sen, Taner Z, Kloczkowski, Andrzej, Jernigan, Robert L

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ProDy 2.0: increased scale and scope after 10 years of protein dynamics modelling with Python von Zhang, She, Krieger, James M, Zhang, Yan, Kaya, Cihan, Kaynak, Burak, Mikulska-Ruminska, Karolina, Doruker, Pemra, Li, Hongchun, Bahar, Ivet

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Allosteric pocket prediction in proteins extracted from their characteristic motions von Kumar, Ambuj, Kaynak, Burak, Doruker, Pemra, Jernigan, Robert L.

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Modulation of Toroidal Proteins Dynamics in Favor of Functional Mechanisms upon Ligand Binding von Li, Hongchun, Doruker, Pemra, Hu, Guang, Bahar, Ivet

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Mixed levels of coarse-graining of large proteins using elastic network model succeeds in extracting the slowest motions von Kurkcuoglu, Ozge, Jernigan, Robert L., Doruker, Pemra

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