Salt bridges: Geometrically specific, designable interactions von Donald, Jason E., Kulp, Daniel W., DeGrado, William F.

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Knowledge-Based Potential for Positioning Membrane-Associated Structures and Assessing Residue-Specific Energetic Contributions von Schramm, Chaim A., Hannigan, Brett T., Donald, Jason E., Keasar, Chen, Saven, Jeffrey G., DeGrado, William F., Samish, Ilan

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Mutation in the Fe-S scaffold protein Isu bypasses frataxin deletion von Yoon, Heeyong, Golla, Ramesh, Lesuisse, Emmanuel, Pain, Jayashree, Donald, Jason E, Lyver, Elise R, Pain, Debkumar, Dancis, Andrew

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Capture and imaging of a prehairpin fusion intermediate of the paramyxovirus PIV5 von Kim, Yong Ho, Donald, Jason E, Grigoryan, Gevorg, Leser, George P, Fadeev, Alexander Y, Lamb, Robert A, DeGrado, William F

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Transmembrane orientation and possible role of the fusogenic peptide from parainfluenza virus 5 (PIV5) in promoting fusion von Donald, Jason E, Zhang, Yao, Fiorin, Giacomo, Carnevale, Vincenzo, Slochower, David R, Gai, Feng, Klein, Michael L, DeGrado, William F

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Neutralizing Epitopes in the Membrane-Proximal External Region of HIV-1 gp41 Are Influenced by the Transmembrane Domain and the Plasma Membrane von MONTERO, Marinieve, GULZAR, Naveed, SHAN LU, BURTON, Dennis R, PAI, Emil F, DEGRADO, William F, SCOTT, Jamie K, KLARIC, Kristina-Ana, DONALD, Jason E, LEPIK, Christa, WU, Sampson, TSAI, Sue, JULIEN, Jean-Philippe, HESSELL, Ann J, SHIXIA WANG

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Functional Analysis of the Transmembrane Domain in Paramyxovirus F Protein-Mediated Membrane Fusion von Bissonnette, Mei Lin Z., Donald, Jason E., DeGrado, William F., Jardetzky, Theodore S., Lamb, Robert A.

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Identification of Interacting Hot Spots in the β3 Integrin Stalk Using Comprehensive Interface Design von Donald, Jason E., Zhu, Hua, Litvinov, Rustem I., DeGrado, William F., Bennett, Joel S.

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Energetics of protein-DNA interactions von Donald, Jason E, Chen, William W, Shakhnovich, Eugene I

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Structural informatics, modeling, and design with an open-source Molecular Software Library (MSL) von Kulp, Daniel W., Subramaniam, Sabareesh, Donald, Jason E., Hannigan, Brett T., Mueller, Benjamin K., Grigoryan, Gevorg, Senes, Alessandro

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SDR: a database of predicted specificity-determining residues in proteins von Donald, Jason E, Shakhnovich, Eugene I

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Predicting specificity-determining residues in two large eukaryotic transcription factor families von Donald, Jason E., Shakhnovich, Eugene I.

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Determining functional specificity from protein sequences von Donald, Jason E., Shakhnovich, Eugene I.

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CoC: a database of universally conserved residues in protein folds von Donald, Jason E., Hubner, Isaac A., Rotemberg, Veronica M., Shakhnovich, Eugene I., Mirny, Leonid A.

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SDR: A Database of Predicted Specificity-Determining Residues in Proteins von Donald, Jason E, Shakhnovich, Eugene Isaacovitch

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Association of Transmembrane Helices in Viral Fusion Peptides Suggests a Protein-Centric Mechanism of Membrane Fusion von Fiorin, Giacomo, Donald, Jason E., Zhang, Yao, Carnevale, Vincenzo, Slochower, David R., Gai, Feng, Klein, Michael L., DeGrado, William F.

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Identification of Stalk Mutations That Stabilize the High Affinity Conformation of αIIbβ3 by Negative Design von Donald, Jason E., Zhu, Hua, DeGrado, William F., Bennett, Joel S.

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Energetics of Protein–DNA Interactions von Donald, Jason E, Chen, William Wei-Lun, Shakhnovich, Eugene Isaacovitch

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Predicting Specificity-Determining Residues in Two Large Eukaryotic Transcription Factor Families von Donald, Jason E, Shakhnovich, Eugene Isaacovitch

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Identification of interacting hot spots in the beta3 integrin stalk using comprehensive interface design von Donald, Jason E, Zhu, Hua, Litvinov, Rustem I, DeGrado, William F, Bennett, Joel S

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