TLR-2 gene Arg753Gln polymorphism is strongly associated with acute rheumatic fever in children von BERDELI, Afig, CELIK, Handan Ak, ÖZYÜREK, Ruhi, DOGRUSOZ, Buket, AYDIN, Hikmet Hakan

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Lack of association between TNFα gene polymorphism at position -308 and risk of acute rheumatic fever in Turkish patients von Berdeli, A., Tabel, Y., Celik, H. A., Ozyürek, R., Dogrusoz, B., Aydin, H. H.

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Lack of association between TNF gene polymorphism at position -308 and risk of acute rheumatic fever in Turkish patients von Berdeli, A., Tabel, Y., Celik, H. A., Ozyürek, R., Dogrusoz, B., Aydin, H. H.

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Lack of association between TNFalpha gene polymorphism at position -308 and risk of acute rheumatic fever in Turkish patients von Berdeli, A, Tabel, Y, Celik, H A, Ozyürek, R, Dogrusoz, B, Aydin, H H

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Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal von Gao, Jianjiong, Aksoy, Bülent Arman, Dogrusoz, Ugur, Dresdner, Gideon, Gross, Benjamin, Sumer, S Onur, Sun, Yichao, Jacobsen, Anders, Sinha, Rileen, Larsson, Erik, Cerami, Ethan, Sander, Chris, Schultz, Nikolaus

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P.3.4 Clinical evaluation of pacemaker therapy in children: Our experience von Parlar, A., Ozyurek, A.R., Levent, E., Ulger, Z., Dogrusöz, B., Gurses, D.

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Oncogenic Signaling Pathways in The Cancer Genome Atlas von Chatila, Walid K., Luna, Augustin, Kantheti, Havish S., Daian, Foysal, Shmulevich, Ilya, Greene, Casey S., Iavarone, Antonio, Tward, Aaron D., Meyerson, Matthew, Sofia, Heidi J., Zenklusen, Jean C., Pihl, Todd, Meier, Sam, Noble, Michael S., Kramer, Roger, Hegde, Apurva M., Li, Jun, Rao, Arvind, Abeshouse, Adam, Schultz, Nikolaus, Taylor, Barry S., Stuart, Joshua M., Wong, Christopher K., Parker, Joel S., Carlsen, Rebecca, Tam, Angela, Gabriel, Stacey B., Ha, Gavin, Schumacher, Steven E., Maglinte, Dennis T., Balu, Saianand, Skelly, Tara, Laird, Peter W., Lewis, Lora, Muzny, Donna, Santibanez, Jireh, Wang, Min, Morris, Scott, Shelton, Candace, Gerken, Mark, Costello, Tony, Reis, Rui M., Scapulatempo-Neto, Cristovam, Singh, Rosy, Duffy, Elizabeth R., Setdikova, Galiya, Devine, Karen, Ostrom, Quinn T., Deyarmin, Brenda, Kvecher, Leonid, Mural, Richard J., Latour, Mathieu, Lacombe, Louis, Lipp, Eric, Marks, Jeffrey, Pickens, Alan, Shin, Dong M., Zhang, Hongzheng, Calatozzolo, Chiara, Cuzzubbo, Stefania, Kycler, Witold, Giné, Eva, Beuschlein, Felix, Borad, Mitesh, Chandan, Vishal, Farnell, Michael, Torbenson, Michael, Logothetis, Christopher, Rice, David, Jakrot, Valerie, Mann, Graham, Moncrieff, Marc, Doruc, Serghei, Bartlett, John, Parfitt, Jeremy, Bifulco, Carlo, Hayward, Nicholas, Grazi, Gianluca, Marino, Mirella, Naska, Theresa, Borgia, Jeffrey A., Pool, Mark, Gaudio, Eugenio, Bell, Sue, Hilty, Joe, Sexton, Katherine C., Asa, Sylvia L., Schlomm, Thorsten, Prados, Michael, Smith-McCune, Karen, Bossler, Aaron, Moxley, Katherine, Carlotti, Carlos Gilberto, Swisher, Elizabeth, Korst, Robert, Rathmell, W. Kimryn, Heath, Sharon, Aredes, Natália D., Mariamidze, Armaz, Van Allen, Eliezer M.

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Patients presenting with metastases: stage IV uveal melanoma, an international study von Garg, Gaurav, Finger, Paul T, Kivelä, Tero T, Simpson, E Rand, Gallie, Brenda L, Saakyan, Svetlana, Amiryan, Anush G, Valskiy, Vladimir, Chin, Kimberly J, Semenova, Ekaterina, Seregard, Stefan, Filì, Maria, Wilson, Matthew, Haik, Barrett, Caminal, Josep Maria, Catala-Mora, Jaume, Gutiérrez, Cristina, Pelayes, David E, Folgar, Anibal Martin, Jager, Martine Johanna, Doğrusöz, Mehmet, Luyten, Gregorius P M, Singh, Arun D, Suzuki, Shigenobu, Finger, Paul T, Coupland, Sarah E, Albert, Daniel M, Amiryan, Anush G, Saakyan, Svetlana, Auw-Hädrich, Claudia, Baker, Diane, Barnhill, Raymond, Caminal, José M, Caroll, William L, Cassoux, Nathalie, Desjardins, Laurence G, Pierron, Gaelle, Catalá-Mora, Jaume, Chantada, Guillermo, Chévez-Barrios, Patricia, Max Conway, R, Damato, Bertil E, Demirci, Hakan, Dutton, Jonathan J, Esmaeli, Bita, Prieto, Victor G, Williams, Michelle, Gallie, Brenda L, Graue, Gerardo F, Grossniklaus, Hans E, Heegaard, Steffen, Holbach, Leonard M, Honavar, Santosh G, Jager, Martine J, Kivelä, Tero T, Kujala, Emma, Rouic, Livia Lumbroso-Le, Mallipatna, Ashwin C, Modorati, Giulio M, Munier, Francis L, Murray, Timothy G, Pavlick, Anna C, Pe’er, Jacob, Pelayes, David E, Rodrigues, Manuel, Sauerwein, Wolfgang A G, Semenova, Ekaterina, Seregard, Stefan, Shields, Carol, Rand Simpson, E, Singh, Arun D, Suzuki, Shigenobu, Washington, Mary Kay, White, Valerie A, Wilson, Mathew W, Wittekind, Christian W, Yin, Vivian

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The Systems Biology Graphical Notation von Wu, Guanming, Mi, Huaiyu, Kim, Sohyoung, Luna, Augustin, Sorokin, Anatoly, Jouraku, Akiya, Li, Lu, Wimalaratne, Sarala M, Wegner, Katja, Watterson, Steven, Bergman, Frank T, Villéger, Alice, Kawaji, Hideya, Sahle, Sven, Ghosh, Samik, Schreiber, Falk, Demir, Emek, Kohn, Kurt, Funahashi, Akira, Kolpakov, Fedor, Sander, Chris, Kitano, Hiroaki, Schmidt, Esther, Sauro, Herbert, Goryanin, Igor, Kell, Douglas B, Ghazal, Peter, Aladjem, Mirit I, Novère, Nicolas Le, Moodie, Stuart, Calzone, Laurence, Matsuoka, Yukiko, Courtot, Melanie, Freeman, Tom C, Snoep, Jacky L, Boyd, Sarah E, Hucka, Michael, Gauges, Ralph, Dogrusoz, Ugur

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A layout algorithm for signaling pathways von Genc, B., Dogrusoz, U.

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Oncogenic signaling pathways in the cancer genome atlas von Sanchez-Vega, F, Mina, M, Armenia, J, Chatila, WK, Luna, A, La, KC, Dimitriadoy, S, Liu, DL, Kantheti, HS, Saghafinia, S, Chakravarty, D, Daian, F, Gao, Q, Bailey, MH, Liang, W-W, Foltz, SM, Shmulevich, I, Ding, L, Heins, Z, Ochoa, A, Gross, B, Gao, J, Zhang, H, Kundra, R, Kandoth, C, Bahceci, I, Dervishi, L, Dogrusoz, U, Zhou, W, Shen, H, Laird, PW, Way, GP, Greene, CS, Liang, H, Xiao, Y, Wang, C, Iavarone, A, Berger, AH, Bivona, TG, Lazar, AJ, Hammer, GD, Giordano, T, Kwong, LN, McArthur, G, Huang, C, Tward, AD, Frederick, MJ, McCormick, F, Meyerson, M, Van Allen, EM, Cherniack, AD, Ciriello, G, Sander, C, Schultz, N

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A multi-graph approach to complexity management in interactive graph visualization von Dogrusoz, U., Genc, B.

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Optimizing Multiple Spaced Seeds for Homology Search von Xu, Jinbo, Brown, Daniel G., Li, Ming, Ma, Bin

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In uveal melanoma Gα-protein GNA11 mutations convey a shorter disease-specific survival and are more strongly associated with loss of BAP1 and chromosomal alterations than Gα-prote... von Piaggio, Francesca, Croce, Michela, Reggiani, Francesco, Monti, Paola, Bernardi, Cinzia, Ambrosio, Marianna, Banelli, Barbara, Dogrusöz, Mehmet, Jockers, Ralf, Bordo, Domenico, Puzone, Roberto, Viaggi, Silvia, Coviello, Domenico, Lanza, Francesco B., Bartolucci, Martina, Petretto, Andrea, Mosci, Carlo, Gangemi, Rosaria, van der Velden, Pieter A., Jager, Martine J., Pfeffer, Ulrich, Amaro, Adriana

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A Constrained, Force-Directed Layout Algorithm for Biological Pathways von Genc, Burkay, Dogrusoz, Ugur

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A Linear-Time Algorithm for Computing Translocation Distance between Signed Genomes von Li, Guojun, Qi, Xingqin, Wang, Xiaoli, Zhu, Binhai

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Erratum: The Systems Biology Graphical Notation von Wimalaratne, Sarala M, Boyd, Sarah E, Li, Lu, Wegner, Katja, Schmidt, Esther, Wu, Guanming, Villéger, Alice, Bergman, Frank T, Demir, Emek, Dogrusoz, Ugur, Kawaji, Hideya, Matsuoka, Yukiko, Sauro, Herbert, Gauges, Ralph, Kell, Douglas B, Freeman, Tom C, Sander, Chris, Kitano, Hiroaki, Mi, Huaiyu, Funahashi, Akira, Kohn, Kurt, Schreiber, Falk, Calzone, Laurence, Hucka, Michael, Sahle, Sven, Snoep, Jacky L, Kim, Sohyoung, Moodie, Stuart, Ghazal, Peter, Ghosh, Samik, Goryanin, Igor, Luna, Augustin, Le Novère, Nicolas, Kolpakov, Fedor, Sorokin, Anatoly, Jouraku, Akiya, Watterson, Steven, Aladjem, Mirit I, Courtot, Melanie

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The Protein Sequence Design Problem in Canonical Model on 2D and 3D Lattices von Berman, Piotr, DasGupta, Bhaskar, Mubayi, Dhruv, Sloan, Robert, Turán, György, Zhang, Yi

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Patients presenting with metastases: stage IV uveal melanoma, an international study von Garg, G., Finger, P.T., Kivela, T.T., Simpson, E.R., Gallie, B.L., Saakyan, S., Amiryan, A.G., Valskiy, V., Chin, K.J., Semenova, E., Seregard, S., Fili, M., Wilson, M., Haik, B., Caminal, J.M., Catala-Mora, J., Gutierrez, C., Pelayes, D.E., Folgar, A.M., Jager, M.J., Dogrusoz, M., Luyten, G.P.M., Singh, A.D., Suzuki, S.

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The Systems Biology Graphical Notation von LE NOVERE, Nicolas, HUCKA, Michael, BERGMAN, Frank T, GAUGES, Ralph, GHAZAL, Peter, KAWAJÏ, Hideya, LU LI, MATSUOKA, Yukiko, VILLEGER, Alice, BOYD, Sarah E, CALZONE, Laurence, COURTOT, Melanie, HUAIYU MI, DOGRUSOZ, Ugur, FREEMAN, Tom C, FUNAHASHI, Akira, GHOSH, Samik, JOURAKU, Akiya, KIM, Sohyoung, KOLPAKOV, Fedor, LUNA, Augustin, SAHLE, Sven, SCHMIDT, Esther, MOODIE, Stuart, WATTERSON, Steven, GUANMING WU, GORYANIN, Igor, KELL, Douglas B, SANDER, Chris, SAURO, Herbert, SNOEP, Jacky L, KOHN, Kurt, KITANO, Hiroaki, SCHREIBER, Falk, SOROKIN, Anatoly, DEMIR, Emek, WEGNER, Katja, ALADJEM, Mirit I, WIMALARATNE, Sarala M

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