Structural Genomics of SARS-CoV-2 Indicates Evolutionary Conserved Functional Regions of Viral Proteins von Srinivasan, Suhas, Cui, Hongzhu, Gao, Ziyang, Liu, Ming, Lu, Senbao, Mkandawire, Winnie, Narykov, Oleksandr, Sun, Mo, Korkin, Dmitry

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Computational protein modeling and the next viral pandemic von Narykov, Oleksandr, Srinivasan, Suhas, Korkin, Dmitry

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Asymmetric trichotomous partitioning overcomes dataset limitations in building machine learning models for predicting siRNA efficacy von Monopoli, Kathryn R., Korkin, Dmitry, Khvorova, Anastasia

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Determining effects of non-synonymous SNPs on protein-protein interactions using supervised and semi-supervised learning von Zhao, Nan, Han, Jing Ginger, Shyu, Chi-Ren, Korkin, Dmitry

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The Extent of Edgetic Perturbations in the Human Interactome Caused by Population-Specific Mutations von Cui, Hongzhu, Srinivasan, Suhas, Gao, Ziyang, Korkin, Dmitry

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Integrating diverse data for structure determination of macromolecular assemblies von Alber, Frank, Förster, Friedrich, Korkin, Dmitry, Topf, Maya, Sali, Andrej

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Finding shortest and nearly shortest path nodes in large substantially incomplete networks by hyperbolic mapping von Kitsak, Maksim, Ganin, Alexander, Elmokashfi, Ahmed, Cui, Hongzhu, Eisenberg, Daniel A., Alderson, David L., Korkin, Dmitry, Linkov, Igor

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The genome of the soybean cyst nematode (Heterodera glycines) reveals complex patterns of duplications involved in the evolution of parasitism genes von Masonbrink, Rick, Maier, Tom R, Muppirala, Usha, Seetharam, Arun S, Lord, Etienne, Juvale, Parijat S, Schmutz, Jeremy, Johnson, Nathan T, Korkin, Dmitry, Mitchum, Melissa G, Mimee, Benjamin, den Akker, Sebastian Eves-van, Hudson, Matthew, Severin, Andrew J, Baum, Thomas J

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Protein interaction network of alternatively spliced isoforms from brain links genetic risk factors for autism von Corominas, Roser, Yang, Xinping, Lin, Guan Ning, Kang, Shuli, Shen, Yun, Ghamsari, Lila, Broly, Martin, Rodriguez, Maria, Tam, Stanley, Wanamaker, Shelly A., Fan, Changyu, Yi, Song, Tasan, Murat, Lemmens, Irma, Kuang, Xingyan, Zhao, Nan, Malhotra, Dheeraj, Michaelson, Jacob J., Vacic, Vladimir, Calderwood, Michael A., Roth, Frederick P., Tavernier, Jan, Horvath, Steve, Salehi-Ashtiani, Kourosh, Korkin, Dmitry, Sebat, Jonathan, Hill, David E., Hao, Tong, Vidal, Marc, Iakoucheva, Lilia M.

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Correction: The genome of the soybean cyst nematode (Heterodera glycines) reveals complex patterns of duplications involved in the evolution of parasitism genes von Masonbrink, Rick, Maier, Tom R, Muppirala, Usha, Seetharam, Arun S, Lord, Etienne, Juvale, Parijat S, Schmutz, Jeremy, Johnson, Nathan T, Korkin, Dmitry, Mitchum, Melissa G, Mimee, Benjamin, den Akker, Sebastian Eves-van, Hudson, Matthew, Severin, Andrew J, Baum, Thomas J

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Literature mining of host―pathogen interactions: comparing feature-based supervised learning and language-based approaches von THIEU, Thanh, JOSHI, Sneha, WARREN, Samantha, KORKIN, Dmitry

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Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions von Moretti, Rocco, Fleishman, Sarel J., Agius, Rudi, Torchala, Mieczyslaw, Bates, Paul A., Kastritis, Panagiotis L., Rodrigues, João P. G. L. M., Trellet, Mikaël, Bonvin, Alexandre M. J. J., Cui, Meng, Rooman, Marianne, Gillis, Dimitri, Dehouck, Yves, Moal, Iain, Romero-Durana, Miguel, Perez-Cano, Laura, Pallara, Chiara, Jimenez, Brian, Fernandez-Recio, Juan, Flores, Samuel, Pacella, Michael, Praneeth Kilambi, Krishna, Gray, Jeffrey J., Popov, Petr, Grudinin, Sergei, Esquivel-Rodríguez, Juan, Kihara, Daisuke, Zhao, Nan, Korkin, Dmitry, Zhu, Xiaolei, Demerdash, Omar N. A., Mitchell, Julie C., Kanamori, Eiji, Tsuchiya, Yuko, Nakamura, Haruki, Lee, Hasup, Park, Hahnbeom, Seok, Chaok, Sarmiento, Jamica, Liang, Shide, Teraguchi, Shusuke, Standley, Daron M., Shimoyama, Hiromitsu, Terashi, Genki, Takeda-Shitaka, Mayuko, Iwadate, Mitsuo, Umeyama, Hideaki, Beglov, Dmitri, Hall, David R., Kozakov, Dima, Vajda, Sandor, Pierce, Brian G., Hwang, Howook, Vreven, Thom, Weng, Zhiping, Huang, Yangyu, Li, Haotian, Yang, Xiufeng, Ji, Xiaofeng, Liu, Shiyong, Xiao, Yi, Zacharias, Martin, Qin, Sanbo, Zhou, Huan-Xiang, Huang, Sheng-You, Zou, Xiaoqin, Velankar, Sameer, Janin, Joël, Wodak, Shoshana J., Baker, David

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Dual roles for the variable domain in protein trafficking and host-specific recognition of Heterodera glycines CLE effector proteins von Wang, Jianying, Lee, Chris, Replogle, Amy, Joshi, Sneha, Korkin, Dmitry, Hussey, Richard, Baum, Thomas J., Davis, Eric L., Wang, Xiaohong, Mitchum, Melissa G.

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Author Correction: Protein interaction network of alternatively spliced isoforms from brain links genetic risk factors for autism von Corominas, Roser, Yang, Xinping, Lin, Guan Ning, Kang, Shuli, Shen, Yun, Ghamsari, Lila, Broly, Martin, Rodriguez, Maria, Tam, Stanley, Wanamaker, Shelly A., Fan, Changyu, Yi, Song, Tasan, Murat, Lemmens, Irma, Kuang, Xingyan, Zhao, Nan, Malhotra, Dheeraj, Michaelson, Jacob J., Vacic, Vladimir, Calderwood, Michael A., Roth, Frederick P., Tavernier, Jan, Horvath, Steve, Salehi-Ashtiani, Kourosh, Korkin, Dmitry, Sebat, Jonathan, Hill, David E., Hao, Tong, Vidal, Marc, Iakoucheva, Lilia M.

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Short-Stalked Prosthecomicrobium hirschii Cells Have a Caulobacter-Like Cell Cycle von Williams, Michelle, Hoffman, Michelle D, Daniel, Jeremy J, Madren, Seth M, Dhroso, Andi, Korkin, Dmitry, Givan, Scott A, Jacobson, Stephen C, Brown, Pamela J B

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Evidence of positive selection in mitochondrial complexes I and V of the African elephant von Finch, Tabitha M, Zhao, Nan, Korkin, Dmitry, Frederick, Katy H, Eggert, Lori S

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Controlled modification of biomolecules by ultrashort laser pulses in polar liquids von Gruzdev, Vitaly, Korkin, Dmitry, Mooney, Brian P., Havelund, Jesper F., Møller, Ian Max, Thelen, Jay J.

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Long identical multispecies elements in plant and animal genomes von Reneker, Jeff, Lyons, Eric, Conant, Gavin C, Pires, J. Chris, Freeling, Michael, Shyu, Chi-Ren, Korkin, Dmitry

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Histological quantitation of brain injury using whole slide imaging: a pilot validation study in mice von Chen, Zhenzhou, Shin, Dmitriy, Chen, Shanyan, Mikhail, Kovalenko, Hadass, Orr, Tomlison, Brittany N, Korkin, Dmitry, Shyu, Chi-Ren, Cui, Jiankun, Anthony, Douglas C, Gu, Zezong

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Extreme evolutionary conservation of functionally important regions in H1N1 influenza proteome von Warren, Samantha, Wan, Xiu-Feng, Conant, Gavin, Korkin, Dmitry

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