mixOmics: An R package for 'omics feature selection and multiple data integration von Rohart, Florian, Gautier, Benoît, Singh, Amrit, Lê Cao, Kim-Anh

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Mindboggling morphometry of human brains von Klein, Arno, Ghosh, Satrajit S, Bao, Forrest S, Giard, Joachim, Häme, Yrjö, Stavsky, Eliezer, Lee, Noah, Rossa, Brian, Reuter, Martin, Chaibub Neto, Elias, Keshavan, Anisha

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Exploring the single-cell RNA-seq analysis landscape with the scRNA-tools database von Zappia, Luke, Phipson, Belinda, Oshlack, Alicia

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Cytofkit: A Bioconductor Package for an Integrated Mass Cytometry Data Analysis Pipeline von Chen, Hao, Lau, Mai Chan, Wong, Michael Thomas, Newell, Evan W, Poidinger, Michael, Chen, Jinmiao

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BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods von Gorgolewski, Krzysztof J, Alfaro-Almagro, Fidel, Auer, Tibor, Bellec, Pierre, Capotă, Mihai, Chakravarty, M Mallar, Churchill, Nathan W, Cohen, Alexander Li, Craddock, R Cameron, Devenyi, Gabriel A, Eklund, Anders, Esteban, Oscar, Flandin, Guillaume, Ghosh, Satrajit S, Guntupalli, J Swaroop, Jenkinson, Mark, Keshavan, Anisha, Kiar, Gregory, Liem, Franziskus, Raamana, Pradeep Reddy, Raffelt, David, Steele, Christopher J, Quirion, Pierre-Olivier, Smith, Robert E, Strother, Stephen C, Varoquaux, Gaël, Wang, Yida, Yarkoni, Tal, Poldrack, Russell A

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Polypolish: Short-read polishing of long-read bacterial genome assemblies von Wick, Ryan R, Holt, Kathryn E

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ProMod3-A versatile homology modelling toolbox von Studer, Gabriel, Tauriello, Gerardo, Bienert, Stefan, Biasini, Marco, Johner, Niklaus, Schwede, Torsten

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Sustainable Restoration Criteria for a Historical Steel Railway Bridge von Dinas, A., Nikolaidis, Th.N., Baniotopoulos, C.C.

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Two-dimensional video-based analysis of human gait using pose estimation von Stenum, Jan, Rossi, Cristina, Roemmich, Ryan T

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Accurate model and ensemble refinement using cryo-electron microscopy maps and Bayesian inference von Hoff, Samuel E, Thomasen, F Emil, Lindorff-Larsen, Kresten, Bonomi, Massimiliano

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Dissecting peripheral protein-membrane interfaces von Tubiana, Thibault, Sillitoe, Ian, Orengo, Christine, Reuter, Nathalie

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Biology of Ageing and Role of Dietary Antioxidants von Wang, Xiaobo, Peng, Cheng, Chen, Jingnan, Jiao, Rui, Wang, Lijun, Li, Yuk Man, Zuo, Yuanyuan, Liu, Yuwei, Lei, Lin, Ma, Ka Ying, Huang, Yu, Chen, Zhen-Yu

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A spectrum of free software tools for processing the VCF variant call format: vcflib, bio-vcf, cyvcf2, hts-nim and slivar von Garrison, Erik, Kronenberg, Zev N, Dawson, Eric T, Pedersen, Brent S, Prins, Pjotr

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Exploring the potential of structure-based deep learning approaches for T cell receptor design von Ribeiro-Filho, Helder V, Jara, Gabriel E, Guerra, João V S, Cheung, Melyssa, Felbinger, Nathaniel R, Pereira, José G C, Pierce, Brian G, Lopes-de-Oliveira, Paulo S

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Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile von Bryant, Patrick, Noé, Frank

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Protein loop structure prediction by community-based deep learning and its application to antibody CDR H3 loop modeling von Woo, Hyeonuk, Kim, Yubeen, Seok, Chaok

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The SKMT Algorithm: A method for assessing and comparing underlying protein entanglement von Bale, Arron, Rambo, Robert, Prior, Christopher

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OpenSim: Simulating musculoskeletal dynamics and neuromuscular control to study human and animal movement von Seth, Ajay, Hicks, Jennifer L, Uchida, Thomas K, Habib, Ayman, Dembia, Christopher L, Dunne, James J, Ong, Carmichael F, DeMers, Matthew S, Rajagopal, Apoorva, Millard, Matthew, Hamner, Samuel R, Arnold, Edith M, Yong, Jennifer R, Lakshmikanth, Shrinidhi K, Sherman, Michael A, Ku, Joy P, Delp, Scott L

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speaq 2.0: A complete workflow for high-throughput 1D NMR spectra processing and quantification von Beirnaert, Charlie, Meysman, Pieter, Vu, Trung Nghia, Hermans, Nina, Apers, Sandra, Pieters, Luc, Covaci, Adrian, Laukens, Kris

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OrganoID: A versatile deep learning platform for tracking and analysis of single-organoid dynamics von Matthews, Jonathan M, Schuster, Brooke, Kashaf, Sara Saheb, Liu, Ping, Ben-Yishay, Rakefet, Ishay-Ronen, Dana, Izumchenko, Evgeny, Shen, Le, Weber, Christopher R, Bielski, Margaret, Kupfer, Sonia S, Bilgic, Mustafa, Rzhetsky, Andrey, Tay, Savaş

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