Enhancer hijacking activates oncogenic transcription factor NR4A3 in acinic cell carcinomas of the salivary glands von Haller, Florian, Bieg, Matthias, Will, Rainer, Körner, Cindy, Weichenhan, Dieter, Bott, Alexander, Ishaque, Naveed, Lutsik, Pavlo, Moskalev, Evgeny A., Mueller, Sarina K., Bähr, Marion, Woerner, Angelika, Kaiser, Birgit, Scherl, Claudia, Haderlein, Marlen, Kleinheinz, Kortine, Fietkau, Rainer, Iro, Heinrich, Eils, Roland, Hartmann, Arndt, Plass, Christoph, Wiemann, Stefan, Agaimy, Abbas

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Epigenetic reprogramming of airway macrophages promotes polarization and inflammation in muco-obstructive lung disease von Hey, Joschka, Paulsen, Michelle, Toth, Reka, Weichenhan, Dieter, Butz, Simone, Schatterny, Jolanthe, Liebers, Reinhard, Lutsik, Pavlo, Plass, Christoph, Mall, Marcus A.

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Tagmentation-based whole-genome bisulfite sequencing von Wang, Qi, Gu, Lei, Adey, Andrew, Radlwimmer, Bernhard, Wang, Wei, Hovestadt, Volker, Bähr, Marion, Wolf, Stephan, Shendure, Jay, Eils, Roland, Plass, Christoph, Weichenhan, Dieter

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Neuronal ensemble-specific DNA methylation strengthens engram stability von Gulmez Karaca, Kubra, Kupke, Janina, Brito, David V. C., Zeuch, Benjamin, Thome, Christian, Weichenhan, Dieter, Lutsik, Pavlo, Plass, Christoph, Oliveira, Ana M. M.

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DNA methylation signatures of monozygotic twins clinically discordant for multiple sclerosis von Souren, Nicole Y., Gerdes, Lisa A., Lutsik, Pavlo, Gasparoni, Gilles, Beltrán, Eduardo, Salhab, Abdulrahman, Kümpfel, Tania, Weichenhan, Dieter, Plass, Christoph, Hohlfeld, Reinhard, Walter, Jörn

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Distinct epigenetic programs regulate cardiac myocyte development and disease in the human heart in vivo von Gilsbach, Ralf, Schwaderer, Martin, Preissl, Sebastian, Grüning, Björn A., Kranzhöfer, David, Schneider, Pedro, Nührenberg, Thomas G., Mulero-Navarro, Sonia, Weichenhan, Dieter, Braun, Christian, Dreßen, Martina, Jacobs, Adam R., Lahm, Harald, Doenst, Torsten, Backofen, Rolf, Krane, Markus, Gelb, Bruce D., Hein, Lutz

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Long Noncoding RNA TARID Directs Demethylation and Activation of the Tumor Suppressor TCF21 via GADD45A von Arab, Khelifa, Park, Yoon Jung, Lindroth, Anders M., Schäfer, Andrea, Oakes, Christopher, Weichenhan, Dieter, Lukanova, Annekatrin, Lundin, Eva, Risch, Angela, Meister, Michael, Dienemann, Hendrik, Dyckhoff, Gerhard, Herold-Mende, Christel, Grummt, Ingrid, Niehrs, Christof, Plass, Christoph

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Globally altered epigenetic landscape and delayed osteogenic differentiation in H3.3-G34W-mutant giant cell tumor of bone von Lutsik, Pavlo, Baude, Annika, Mancarella, Daniela, Öz, Simin, Kühn, Alexander, Toth, Reka, Hey, Joschka, Toprak, Umut H., Lim, Jinyeong, Nguyen, Viet Ha, Jiang, Chao, Mayakonda, Anand, Hartmann, Mark, Rosemann, Felix, Breuer, Kersten, Vonficht, Dominik, Grünschläger, Florian, Lee, Suman, Schuhmacher, Maren Kirstin, Kusevic, Denis, Jauch, Anna, Weichenhan, Dieter, Zustin, Jozef, Schlesner, Matthias, Haas, Simon, Park, Joo Hyun, Park, Yoon Jung, Oppermann, Udo, Jeltsch, Albert, Haller, Florian, Fellenberg, Jörg, Lindroth, Anders M., Plass, Christoph

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DNMT and HDAC inhibitors induce cryptic transcription start sites encoded in long terminal repeats von Brocks, David, Schmidt, Christopher R, Daskalakis, Michael, Jang, Hyo Sik, Shah, Nakul M, Li, Daofeng, Li, Jing, Zhang, Bo, Hou, Yiran, Laudato, Sara, Lipka, Daniel B, Schott, Johanna, Bierhoff, Holger, Assenov, Yassen, Helf, Monika, Ressnerova, Alzbeta, Islam, Md Saiful, Lindroth, Anders M, Haas, Simon, Essers, Marieke, Imbusch, Charles D, Brors, Benedikt, Oehme, Ina, Witt, Olaf, Lübbert, Michael, Mallm, Jan-Philipp, Rippe, Karsten, Will, Rainer, Weichenhan, Dieter, Stoecklin, Georg, Gerhäuser, Clarissa, Oakes, Christopher C, Wang, Ting, Plass, Christoph

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Integrative Analysis Defines Distinct Prognostic Subgroups of Intrahepatic Cholangiocarcinoma von Goeppert, Benjamin, Toth, Reka, Singer, Stephan, Albrecht, Thomas, Lipka, Daniel B., Lutsik, Pavlo, Brocks, David, Baehr, Marion, Muecke, Oliver, Assenov, Yassen, Gu, Lei, Endris, Volker, Stenzinger, Albrecht, Mehrabi, Arianeb, Schirmacher, Peter, Plass, Christoph, Weichenhan, Dieter, Roessler, Stephanie

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DNA methylation dynamics during B cell maturation underlie a continuum of disease phenotypes in chronic lymphocytic leukemia von Oakes, Christopher C, Seifert, Marc, Assenov, Yassen, Gu, Lei, Przekopowitz, Martina, Ruppert, Amy S, Wang, Qi, Imbusch, Charles D, Serva, Andrius, Koser, Sandra D, Brocks, David, Lipka, Daniel B, Bogatyrova, Olga, Weichenhan, Dieter, Brors, Benedikt, Rassenti, Laura, Kipps, Thomas J, Mertens, Daniel, Zapatka, Marc, Lichter, Peter, Döhner, Hartmut, Küppers, Ralf, Zenz, Thorsten, Stilgenbauer, Stephan, Byrd, John C, Plass, Christoph

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Epigenome-Wide Association Study Identifies Cardiac Gene Patterning and a Novel Class of Biomarkers for Heart Failure von Meder, Benjamin, Haas, Jan, Sedaghat-Hamedani, Farbod, Kayvanpour, Elham, Frese, Karen, Lai, Alan, Nietsch, Rouven, Scheiner, Christina, Mester, Stefan, Bordalo, Diana Martins, Amr, Ali, Dietrich, Carsten, Pils, Dietmar, Siede, Dominik, Hund, Hauke, Bauer, Andrea, Holzer, Daniel Benjamin, Ruhparwar, Arjang, Mueller-Hennessen, Matthias, Weichenhan, Dieter, Plass, Christoph, Weis, Tanja, Backs, Johannes, Wuerstle, Maximilian, Keller, Andreas, Katus, Hugo A, Posch, Andreas E

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The transcriptomic and epigenetic map of vascular quiescence in the continuous lung endothelium von Schlereth, Katharina, Weichenhan, Dieter, Bauer, Tobias, Heumann, Tina, Giannakouri, Evangelia, Lipka, Daniel, Jaeger, Samira, Schlesner, Matthias, Aloy, Patrick, Eils, Roland, Plass, Christoph, Augustin, Hellmut G

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Rbpj expression in regulatory T cells is critical for restraining TH2 responses von Delacher, Michael, Schmidl, Christian, Herzig, Yonatan, Breloer, Minka, Hartmann, Wiebke, Brunk, Fabian, Kägebein, Danny, Träger, Ulrike, Hofer, Ann-Cathrin, Bittner, Sebastian, Weichenhan, Dieter, Imbusch, Charles D., Hotz-Wagenblatt, Agnes, Hielscher, Thomas, Breiling, Achim, Federico, Giuseppina, Gröne, Hermann-Josef, Schmid, Roland M., Rehli, Michael, Abramson, Jakub, Feuerer, Markus

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Maternal phthalate exposure promotes allergic airway inflammation over 2 generations through epigenetic modifications von Jahreis, Susanne, PhD, Trump, Saskia, PhD, Bauer, Mario, MD, Bauer, Tobias, PhD, Thürmann, Loreen, MSc, Feltens, Ralph, PhD, Wang, Qi, PhD, Gu, Lei, PhD, Grützmann, Konrad, PhD, Röder, Stefan, PhD, Averbeck, Marco, MD, Weichenhan, Dieter, PhD, Plass, Christoph, PhD, Sack, Ulrich, MD, Borte, Michael, MD, Dubourg, Virginie, MSc, Schüürmann, Gerrit, PhD, Simon, Jan C., MD, von Bergen, Martin, PhD, Hackermüller, Jörg, PhD, Eils, Roland, PhD, Lehmann, Irina, PhD, Polte, Tobias, PhD

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Integrative analysis reveals early and distinct genetic and epigenetic changes in intraductal papillary and tubulopapillary cholangiocarcinogenesis von Goeppert, Benjamin, Stichel, Damian, Toth, Reka, Fritzsche, Sarah, Loeffler, Moritz Anton, Schlitter, Anna Melissa, Neumann, Olaf, Assenov, Yassen, Vogel, Monika Nadja, Mehrabi, Arianeb, Hoffmann, Katrin, Köhler, Bruno, Springfeld, Christoph, Weichenhan, Dieter, Plass, Christoph, Esposito, Irene, Schirmacher, Peter, von Deimling, Andreas, Roessler, Stephanie

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Club cells employ regeneration mechanisms during lung tumorigenesis von Chen, Yuanyuan, Toth, Reka, Chocarro, Sara, Weichenhan, Dieter, Hey, Joschka, Lutsik, Pavlo, Sawall, Stefan, Stathopoulos, Georgios T., Plass, Christoph, Sotillo, Rocio

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Increased vitamin D levels at birth and in early infancy increase offspring allergy risk—evidence for involvement of epigenetic mechanisms von Junge, Kristin M., PhD, Bauer, Tobias, PhD, Geissler, Stefanie, PhD, Hirche, Frank, PhD, Thürmann, Loreen, MSc, Bauer, Mario, MD, Trump, Saskia, PhD, Bieg, Matthias, MSc, Weichenhan, Dieter, PhD, Gu, Lei, PhD, Mallm, Jan-Philipp, PhD, Ishaque, Naveed, PhD, Mücke, Oliver, Röder, Stefan, PhD, Herberth, Gunda, PhD, Diez, Ulrike, MD, Borte, Michael, MD, Rippe, Karsten, PhD, Plass, Christoph, PhD, Hermann, Carl, PhD, Stangl, Gabriele I., PhD, Eils, Roland, PhD, Lehmann, Irina, PhD

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Aberrant MNX1 expression associated with t(7;12)(q36;p13) pediatric acute myeloid leukemia induces the disease through altering histone methylation von Waraky, Ahmed, Östlund, Anders, Nilsson, Tina, Weichenhan, Dieter, Lutsik, Pavlo, Bähr, Marion, Hey, Joschka, Tunali, Gürcan, Adamsson, Jenni, Jacobsson, Susanna, Morsy, Mohammad Hamdy Abdelrazak, Li, Susann, Fogelstrand, Linda, Plass, Christoph, Palmqvist, Lars

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Global alterations of DNA methylation in cholangiocarcinoma target the Wnt signaling pathway von Goeppert, Benjamin, Konermann, Carolin, Schmidt, Christopher Roman, Bogatyrova, Olga, Geiselhart, Lea, Ernst, Christina, Gu, Lei, Becker, Natalia, Zucknick, Manuela, Mehrabi, Arianeb, Hafezi, Mohammadreza, Klauschen, Frederick, Stenzinger, Albrecht, Warth, Arne, Breuhahn, Kai, Renner, Marcus, Weichert, Wilko, Schirmacher, Peter, Plass, Christoph, Weichenhan, Dieter

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