Haplotype-resolved genome assembly enables gene discovery in the red palm weevil Rhynchophorus ferrugineus von Dias, Guilherme B., Altammami, Musaad A., El-Shafie, Hamadttu A. F., Alhoshani, Fahad M., Al-Fageeh, Mohamed B., Bergman, Casey M., Manee, Manee M.

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De novo identification of satellite DNAs in the sequenced genomes of Drosophila virilis and D. americana using the RepeatExplorer and TAREAN pipelines von Silva, Bráulio S M L, Heringer, Pedro, Dias, Guilherme B, Svartman, Marta, Kuhn, Gustavo C S

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Omics in the Red Palm Weevil Rhynchophorus ferrugineus (Olivier) (Coleoptera: Curculionidae): A Bridge to the Pest von Manee, Manee M, Alqahtani, Fahad H, Al-Shomrani, Badr M, El-Shafie, Hamadttu A F, Dias, Guilherme B

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Phased Diploid Genome Assemblies for Three Strains of Candida albicans from Oak Trees von Hamlin, Jennafer A P, Dias, Guilherme B, Bergman, Casey M, Bensasson, Douda

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Hybrid dysgenesis in Drosophila virilis results in clusters of mitotic recombination and loss-of-heterozygosity but leaves meiotic recombination unaltered von Hemmer, Lucas W., Dias, Guilherme B., Smith, Brittny, Van Vaerenberghe, Kelley, Howard, Ashley, Bergman, Casey M., Blumenstiel, Justin P.

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A Horizontally Transferred Autonomous Helitron Became a Full Polydnavirus Segment in Cotesia vestalis von Heringer, Pedro, Dias, Guilherme B, Kuhn, Gustavo C S

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Complete mitochondrial genome of the longhorn date palm stem borer Jebusaea hammerschmidtii (Reiche, 1878) von Dias, Guilherme B., Aldossary, Ahmad M., El-Shafie, Hamadttu A.F., Alhoshani, Fahad M., Al-Fageeh, Mohamed B., Bergman, Casey M., Manee, Manee M.

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Local assembly of long reads enables phylogenomics of transposable elements in a polyploid cell line von Han, Shunhua, Dias, Guilherme B, Basting, Preston J, Viswanatha, Raghuvir, Perrimon, Norbert, Bergman, Casey M

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Transposable element profiles reveal cell line identity and loss of heterozygosity in Drosophila cell culture von Han, Shunhua, Basting, Preston J, Dias, Guilherme B, Luhur, Arthur, Zelhof, Andrew C, Bergman, Casey M

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Ongoing transposition in cell culture reveals the phylogeny of diverse Drosophila S2 sublines von Han, Shunhua, Dias, Guilherme B, Basting, Preston J, Nelson, Michael G, Patel, Sanjai, Marzo, Mar, Bergman, Casey M

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Concurrent Duplication of Drosophila Cid and Cenp-C Genes Resulted in Accelerated Evolution and Male Germline-Biased Expression of the New Copies von Teixeira, José R., Dias, Guilherme B., Svartman, Marta, Ruiz, Alfredo, Kuhn, Gustavo C. S.

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Helitrons shaping the genomic architecture of Drosophila: enrichment of DINE-TR1 in α- and β-heterochromatin, satellite DNA emergence, and piRNA expression von Dias, Guilherme B., Heringer, Pedro, Svartman, Marta, Kuhn, Gustavo C. S.

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Tetris Is a Foldback Transposon that Provided the Building Blocks for an Emerging Satellite DNA of Drosophila virilis von Dias, Guilherme B., Svartman, Marta, Delprat, Alejandra, Ruiz, Alfredo, Kuhn, Gustavo C.S.

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Genomics of ecological adaptation in cactophilic Drosophila von Guillén, Yolanda, Rius, Núria, Delprat, Alejandra, Williford, Anna, Muyas, Francesc, Puig, Marta, Casillas, Sònia, Ràmia, Miquel, Egea, Raquel, Negre, Barbara, Mir, Gisela, Camps, Jordi, Moncunill, Valentí, Ruiz-Ruano, Francisco J, Cabrero, Josefa, de Lima, Leonardo G, Dias, Guilherme B, Ruiz, Jeronimo C, Kapusta, Aurélie, Garcia-Mas, Jordi, Gut, Marta, Gut, Ivo G, Torrents, David, Camacho, Juan P, Kuhn, Gustavo C S, Feschotte, Cédric, Clark, Andrew G, Betrán, Esther, Barbadilla, Antonio, Ruiz, Alfredo

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Helitrons in Drosophila: Chromatin modulation and tandem insertions von Dias, Guilherme B., Heringer, Pedro, Kuhn, Gustavo C. S.

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Omics in the Red Palm Weevil IRhynchophorus ferrugineus/I : A Bridge to the Pest von Manee, Manee M, Alqahtani, Fahad H, Al-Shomrani, Badr M, El-Shafie, Hamadttu A. F, Dias, Guilherme B

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Helitrons shaping the genomic architecture of Drosophila: enrichment of DINE-TR1 in [alpha]- and [beta]-heterochromatin, satellite DNA emergence, and piRNA expression von Dias, Guilherme B, Heringer, Pedro, Svartman, Marta, Kuhn, Gustavo C, S

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Supplemental Material for Han et al., 2021 von Han, Shunhua, J. Basting, Preston, Dias, Guilherme B., Luhur, Arthur, Zelhof, Andrew C., M. Bergman, Casey

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Supplemental Material for Han et al., 2022 von Han, Shunhua, Dias, Guilherme B., J. Basting, Preston, Nelson, Michael G., Patel, Sanjai, Marzo, Mar, M. Bergman, Casey

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Tetris Is a Foldback Transposon that Provided the Building Blocks for an Emerging Satellite DNA of Drosophila virilis von Dias, Guilherme B, Svartman, Marta, Delprat Obeaga, Alejandra, Ruiz, Alfredo, Kuhn, Gustavo C. S

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