bollito: a flexible pipeline for comprehensive single-cell RNA-seq analyses von García-Jimeno, Luis, Fustero-Torre, Coral, Jiménez-Santos, María José, Gómez-López, Gonzalo, Di Domenico, Tomás, Al-Shahrour, Fátima

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MobiDB 2.0: an improved database of intrinsically disordered and mobile proteins von Potenza, Emilio, Domenico, Tomás Di, Walsh, Ian, Tosatto, Silvio C.E.

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RAPHAEL: recognition, periodicity and insertion assignment of solenoid protein structures von WALSH, Ian, SIROCCO, Francesco G, MINERVINI, Giovanni, DI DOMENICO, Tomas, FERRARI, Carlo, TOSATTO, Silvio C. E

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Analysis and consensus of currently available intrinsic protein disorder annotation sources in the MobiDB database von Di Domenico, Tomás, Walsh, Ian, Tosatto, Silvio C E

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GENCODE 2021 von Frankish, Adam, Diekhans, Mark, Jungreis, Irwin, Lagarde, Julien, Loveland, Jane E, Mudge, Jonathan M, Sisu, Cristina, Wright, James C, Armstrong, Joel, Barnes, If, Berry, Andrew, Bignell, Alexandra, Boix, Carles, Carbonell Sala, Silvia, Cunningham, Fiona, Di Domenico, Tomás, Donaldson, Sarah, Fiddes, Ian T, García Girón, Carlos, Gonzalez, Jose Manuel, Grego, Tiago, Hardy, Matthew, Hourlier, Thibaut, Howe, Kevin L, Hunt, Toby, Izuogu, Osagie G, Johnson, Rory, Martin, Fergal J, Martínez, Laura, Mohanan, Shamika, Muir, Paul, Navarro, Fabio C P, Parker, Anne, Pei, Baikang, Pozo, Fernando, Riera, Ferriol Calvet, Ruffier, Magali, Schmitt, Bianca M, Stapleton, Eloise, Suner, Marie-Marthe, Sycheva, Irina, Uszczynska-Ratajczak, Barbara, Wolf, Maxim Y, Xu, Jinuri, Yang, Yucheng T, Yates, Andrew, Zerbino, Daniel, Zhang, Yan, Choudhary, Jyoti S, Gerstein, Mark, Guigó, Roderic, Hubbard, Tim J P, Kellis, Manolis, Paten, Benedict, Tress, Michael L, Flicek, Paul

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MobiDB 2.0: an improved database of intrinsically disordered and mobile proteins von Potenza, Emilio, Di Domenico, Tomás, Walsh, Ian, Tosatto, Silvio C E

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APPRIS: selecting functionally important isoforms von Rodriguez, Jose Manuel, Pozo, Fernando, Cerdán-Vélez, Daniel, Di Domenico, Tomás, Vázquez, Jesús, Tress, Michael L

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Comprehensive large-scale assessment of intrinsic protein disorder von Walsh, Ian, Giollo, Manuel, Di Domenico, Tomás, Ferrari, Carlo, Zimmermann, Olav, Tosatto, Silvio C E

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RUBI: rapid proteomic-scale prediction of lysine ubiquitination and factors influencing predictor performance von Walsh, Ian, Di Domenico, Tomás, Tosatto, Silvio C. E

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MobiDB: a comprehensive database of intrinsic protein disorder annotations von DI DOMENICO, Tomás, WALSH, Ian, MARTIN, Alberto J. M, TOSATTO, Silvio C. E

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vulcanSpot: a tool to prioritize therapeutic vulnerabilities in cancer von Perales-Patón, Javier, Di Domenico, Tomás, Fustero-Torre, Coral, Piñeiro-Yáñez, Elena, Carretero-Puche, Carlos, Tejero, Héctor, Valencia, Alfonso, Gómez-López, Gonzalo, Al-Shahrour, Fátima

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The Profile and Dynamics of RNA Modifications in Animals von van Delft, Pieter, Akay, Alper, Huber, Sabrina M., Bueschl, Christoph, Rudolph, Konrad L. M., Di Domenico, Tomás, Schuhmacher, Rainer, Miska, Eric A., Balasubramanian, Shankar

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Bioinformatics roadmap for therapy selection in cancer genomics von Jiménez‐Santos, María José, García‐Martín, Santiago, Fustero‐Torre, Coral, Di Domenico, Tomás, Gómez‐López, Gonzalo, Al‐Shahrour, Fátima

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Terminal uridylyltransferases target RNA viruses as part of the innate immune system von Le Pen, Jérémie, Jiang, Hongbing, Di Domenico, Tomás, Kneuss, Emma, Kosałka, Joanna, Leung, Christian, Morgan, Marcos, Much, Christian, Rudolph, Konrad L. M., Enright, Anton J., O’Carroll, Dónal, Wang, David, Miska, Eric A.

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GENCODE reference annotation for the human and mouse genomes von Frankish, Adam, Diekhans, Mark, Ferreira, Anne-Maud, Johnson, Rory, Jungreis, Irwin, Loveland, Jane, Mudge, Jonathan M, Sisu, Cristina, Wright, James, Armstrong, Joel, Barnes, If, Berry, Andrew, Bignell, Alexandra, Carbonell Sala, Silvia, Chrast, Jacqueline, Cunningham, Fiona, Di Domenico, Tomás, Donaldson, Sarah, Fiddes, Ian T, García Girón, Carlos, Gonzalez, Jose Manuel, Grego, Tiago, Hardy, Matthew, Hourlier, Thibaut, Hunt, Toby, Izuogu, Osagie G, Lagarde, Julien, Martin, Fergal J, Martínez, Laura, Mohanan, Shamika, Muir, Paul, Navarro, Fabio C P, Parker, Anne, Pei, Baikang, Pozo, Fernando, Ruffier, Magali, Schmitt, Bianca M, Stapleton, Eloise, Suner, Marie-Marthe, Sycheva, Irina, Uszczynska-Ratajczak, Barbara, Xu, Jinuri, Yates, Andrew, Zerbino, Daniel, Zhang, Yan, Aken, Bronwen, Choudhary, Jyoti S, Gerstein, Mark, Guigó, Roderic, Hubbard, Tim J P, Kellis, Manolis, Paten, Benedict, Reymond, Alexandre, Tress, Michael L, Flicek, Paul

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APPRIS 2017: principal isoforms for multiple gene sets von Rodriguez, Jose Manuel, Rodriguez-Rivas, Juan, Di Domenico, Tomás, Vázquez, Jesús, Valencia, Alfonso, Tress, Michael L

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Highlights from the tenth ISCB Student Council Symposium 2014 von Rahman, Farzana, Wilkins, Katie, Jacobsen, Annika, Junge, Alexander, Vicedo, Esmeralda, DeBlasio, Dan, Jigisha, Anupama, Di Domenico, Tomás

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PANADA: protein association network annotation, determination and analysis von Martin, Alberto J M, Walsh, Ian, Domenico, Tomás Di, Mičetić, Ivan, Tosatto, Silvio C E

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Highlights from the ISCB Student Council Symposium 2013 von Di Domenico, Tomás, Prudence, Cynthia, Vicedo, Esmeralda, Guney, Emre, Jigisha, Anupama, Shanmugam, Avinash

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ESpritz: accurate and fast prediction of protein disorder von Walsh, Ian, Martin, Alberto J. M., Di Domenico, Tomàs, Tosatto, Silvio C. E.

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