MicroRNAs: From Mechanism to Organism von Dexheimer, Philipp J., Cochella, Luisa

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Pediatric Crohn disease patients exhibit specific ileal transcriptome and microbiome signature von Haberman, Yael, Tickle, Timothy L, Dexheimer, Phillip J, Kim, Mi-Ok, Tang, Dora, Karns, Rebekah, Baldassano, Robert N, Noe, Joshua D, Rosh, Joel, Markowitz, James, Heyman, Melvin B, Griffiths, Anne M, Crandall, Wallace V, Mack, David R, Baker, Susan S, Huttenhower, Curtis, Keljo, David J, Hyams, Jeffrey S, Kugathasan, Subra, Walters, Thomas D, Aronow, Bruce, Xavier, Ramnik J, Gevers, Dirk, Denson, Lee A

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Vertical sleeve gastrectomy reduces hepatic steatosis while increasing serum bile acids in a weight‐loss‐independent manner von Myronovych, Andriy, Kirby, Michelle, Ryan, Karen K., Zhang, Wujuan, Jha, Pinky, Setchell, Kenneth DR, Dexheimer, Phillip J., Aronow, Bruce, Seeley, Randy J., Kohli, Rohit

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Intrinsic Age-Dependent Changes and Cell-Cell Contacts Regulate Nephron Progenitor Lifespan von Chen, Shuang, Brunskill, Eric W., Potter, S. Steven, Dexheimer, Phillip J., Salomonis, Nathan, Aronow, Bruce J., Hong, Christian I., Zhang, Tongli, Kopan, Raphael

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Integrated Genomic Analysis of Diverse Induced Pluripotent Stem Cells from the Progenitor Cell Biology Consortium von Salomonis, Nathan, Dexheimer, Phillip J., Omberg, Larsson, Schroll, Robin, Bush, Stacy, Huo, Jeffrey, Schriml, Lynn, Ho Sui, Shannan, Keddache, Mehdi, Mayhew, Christopher, Shanmukhappa, Shiva Kumar, Wells, James, Daily, Kenneth, Hubler, Shane, Wang, Yuliang, Zambidis, Elias, Margolin, Adam, Hide, Winston, Hatzopoulos, Antonis K., Malik, Punam, Cancelas, Jose A., Aronow, Bruce J., Lutzko, Carolyn

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Single cell transcriptomic analysis of HPV16-infected epithelium identifies a keratinocyte subpopulation implicated in cancer von Bedard, Mary C., Chihanga, Tafadzwa, Carlile, Adrean, Jackson, Robert, Brusadelli, Marion G., Lee, Denis, VonHandorf, Andrew, Rochman, Mark, Dexheimer, Phillip J., Chalmers, Jeffrey, Nuovo, Gerard, Lehn, Maria, Williams, David E. J., Kulkarni, Aditi, Carey, Molly, Jackson, Amanda, Billingsley, Caroline, Tang, Alice, Zender, Chad, Patil, Yash, Wise-Draper, Trisha M., Herzog, Thomas J., Ferris, Robert L., Kendler, Ady, Aronow, Bruce J., Kofron, Matthew, Rothenberg, Marc E., Weirauch, Matthew T., Van Doorslaer, Koenraad, Wikenheiser-Brokamp, Kathryn A., Lambert, Paul F., Adam, Mike, Steven Potter, S., Wells, Susanne I.

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Analysis and expansion of the eosinophilic esophagitis transcriptome by RNA sequencing von Sherrill, J D, KC, K, Blanchard, C, Stucke, E M, Kemme, K A, Collins, M H, Abonia, J P, Putnam, P E, Mukkada, V A, Kaul, A, Kocoshis, S A, Kushner, J P, Plassard, A J, Karns, R A, Dexheimer, P J, Aronow, B J, Rothenberg, M E

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Single-cell RNA-Seq of human esophageal epithelium in homeostasis and allergic inflammation von Rochman, Mark, Wen, Ting, Kotliar, Michael, Dexheimer, Phillip J, Ben-Baruch Morgenstern, Netali, Caldwell, Julie M, Lim, Hee-Woong, Rothenberg, Marc E

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Two MicroRNAs Are Sufficient for Embryonic Patterning in C. elegans von Dexheimer, Philipp J., Wang, Jingkui, Cochella, Luisa

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Genetic Causes of Cardiomyopathy in Children: First Results From the Pediatric Cardiomyopathy Genes Study von Ware, Stephanie M., Wilkinson, James D., Tariq, Muhammad, Schubert, Jeffrey A., Sridhar, Arthi, Colan, Steven D., Shi, Ling, Canter, Charles E., Hsu, Daphne T., Webber, Steven A., Dodd, Debra A., Everitt, Melanie D., Kantor, Paul F., Addonizio, Linda J., Jefferies, John L., Rossano, Joseph W., Pahl, Elfriede, Rusconi, Paolo, Chung, Wendy K., Lee, Teresa, Towbin, Jeffrey A., Lal, Ashwin K., Bhatnagar, Surbhi, Aronow, Bruce, Dexheimer, Phillip J., Martin, Lisa J., Miller, Erin M., Sleeper, Lynn A., Razoky, Hiedy, Czachor, Jason, Lipshultz, Steven E.

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Identification of Genes and Pathways Involved in Retinal Neovascularization by Microarray Analysis of Two Animal Models of Retinal Angiogenesis von Recchia, Franco M, Xu, Lili, Penn, John S, Boone, Braden, Dexheimer, Phillip J

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IRAK1 is a novel DEK transcriptional target and is essential for head and neck cancer cell survival von Adams, Allie K, Bolanos, Lyndsey C, Dexheimer, Phillip J, Karns, Rebekah A, Aronow, Bruce J, Komurov, Kakajan, Jegga, Anil G, Casper, Keith A, Patil, Yash J, Wilson, Keith M, Starczynowski, Daniel T, Wells, Susanne I

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Single-cell RNA sequencing identifies inflammatory tissue T cells in eosinophilic esophagitis von Wen, Ting, Aronow, Bruce J, Rochman, Yrina, Rochman, Mark, Kc, Kiran, Dexheimer, Phil J, Putnam, Philip, Mukkada, Vincent, Foote, Heather, Rehn, Kira, Darko, Sam, Douek, Daniel, Rothenberg, Marc E

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Ulcerative colitis mucosal transcriptomes reveal mitochondriopathy and personalized mechanisms underlying disease severity and treatment response von Haberman, Yael, Karns, Rebekah, Dexheimer, Phillip J., Schirmer, Melanie, Somekh, Judith, Jurickova, Ingrid, Braun, Tzipi, Novak, Elizabeth, Bauman, Laura, Collins, Margaret H., Mo, Angela, Rosen, Michael J., Bonkowski, Erin, Gotman, Nathan, Marquis, Alison, Nistel, Mason, Rufo, Paul A., Baker, Susan S., Sauer, Cary G., Markowitz, James, Pfefferkorn, Marian D., Rosh, Joel R., Boyle, Brendan M., Mack, David R., Baldassano, Robert N., Shah, Sapana, Leleiko, Neal S., Heyman, Melvin B., Grifiths, Anne M., Patel, Ashish S., Noe, Joshua D., Aronow, Bruce J., Kugathasan, Subra, Walters, Thomas D., Gibson, Greg, Thomas, Sonia Davis, Mollen, Kevin, Shen-Orr, Shai, Huttenhower, Curtis, Xavier, Ramnik J., Hyams, Jeffrey S., Denson, Lee A.

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Mucosal Genomics Implicate Lymphocyte Activation and Lipid Metabolism in Refractory Environmental Enteric Dysfunction von Haberman, Yael, Iqbal, Najeeha T., Ghandikota, Sudhir, Mallawaarachchi, Indika, Tzipi Braun, Dexheimer, Phillip J., Rahman, Najeeb, Hadar, Rotem, Sadiq, Kamran, Ahmad, Zubair, Idress, Romana, Iqbal, Junaid, Ahmed, Sheraz, Hotwani, Aneeta, Umrani, Fayyaz, Ehsan, Lubaina, Medlock, Greg, Syed, Sana, Moskaluk, Chris, Ma, Jennie Z., Jegga, Anil G., Moore, Sean R., Ali, Syed Asad, Denson, Lee A.

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NF1 patient missense variants predict a role for ATM in modifying neurofibroma initiation von Yu, Yanan, Choi, Kwangmin, Wu, Jianqiang, Andreassen, Paul R., Dexheimer, Phillip J., Keddache, Mehdi, Brems, Hilde, Spinner, Robert J., Cancelas, Jose A., Martin, Lisa J., Wallace, Margaret R., Legius, Eric, Vogel, Kristine S., Ratner, Nancy

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VExD: a curated resource for human gene expression alterations following viral infection von Dexheimer, Phillip J, Pujato, Mario, Roskin, Krishna M, Weirauch, Matthew T

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The genetic architecture of pediatric cardiomyopathy von Ware, Stephanie M., Bhatnagar, Surbhi, Dexheimer, Phillip J., Wilkinson, James D., Sridhar, Arthi, Fan, Xiao, Shen, Yufeng, Tariq, Muhammad, Schubert, Jeffrey A., Colan, Steven D., Shi, Ling, Canter, Charles E., Hsu, Daphne T., Bansal, Neha, Webber, Steven A., Everitt, Melanie D., Kantor, Paul F., Rossano, Joseph W., Pahl, Elfriede, Rusconi, Paolo, Lee, Teresa M., Towbin, Jeffrey A., Lal, Ashwin K., Chung, Wendy K., Miller, Erin M., Aronow, Bruce, Martin, Lisa J., Lipshultz, Steven E.

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Complementary RNA amplification methods enhance microarray identification of transcripts expressed in the C. elegans nervous system von Watson, Joseph D, Wang, Shenglong, Von Stetina, Stephen E, Spencer, W Clay, Levy, Shawn, Dexheimer, Phillip J, Kurn, Nurith, Heath, Joe Don, Miller, 3rd, David M

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Methods for Addressing Technology-induced Errors: The Current State von Borycki, E., Dexheimer, J. W., Cossio, C. Hullin Lucay, Gong, Y., Jensen, S., Kaipio, J., Kennebeck, S., Kirkendall, E., Kushniruk, A. W., Kuziemsky, C., Marcilly, R., Röhrig, R., Saranto, K., Senathirajah, Y., Weber, J., Takeda, H.

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