Whole-genome comparison reveals novel genetic elements that characterize the genome of industrial strains of Saccharomyces cerevisiae von Borneman, Anthony R, Desany, Brian A, Riches, David, Affourtit, Jason P, Forgan, Angus H, Pretorius, Isak S, Egholm, Michael, Chambers, Paul J

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Metabolic streamlining in an open-ocean nitrogen-fixing cyanobacterium von Zehr, Jonathan P, Tripp, H. James, Bench, Shellie R, Turk, Kendra A, Foster, Rachel A, Desany, Brian A, Niazi, Faheem, Affourtit, Jason P

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Low-Abundance Drug-Resistant Viral Variants in Chronically HIV-Infected, Antiretroviral Treatment–Naive Patients Significantly Impact Treatment Outcomes von Simen, Birgitte B., Simons, Jan Fredrik, Hullsiek, Katherine Huppler, Novak, Richard M., MacArthur, Rodger D., Baxter, John D., Huang, Chunli, Lubeski, Christine, Turenchalk, Gregory S., Braverman, Michael S., Desany, Brian, Rothberg, Jonathan M., Egholm, Michael

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Assessing the feasibility of GS FLX Pyrosequencing for sequencing the Atlantic salmon genome von Quinn, Nicole L, Levenkova, Natasha, Chow, William, Bouffard, Pascal, Boroevich, Keith A, Knight, James R, Jarvie, Thomas P, Lubieniecki, Krzysztof P, Desany, Brian A, Koop, Ben F, Harkins, Timothy T, Davidson, William S

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Genomic Analyses of the Microsporidian Nosema ceranae, an Emergent Pathogen of Honey Bees von Cornman, R. Scott, Chen, Yan Ping, Schatz, Michael C, Street, Craig, Zhao, Yan, Desany, Brian, Egholm, Michael, Hutchison, Stephen, Pettis, Jeffery S, Lipkin, W. Ian, Evans, Jay D

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High-throughput 454 resequencing for allele discovery and recombination mapping in Plasmodium falciparum von Samarakoon, Upeka, Regier, Allison, Tan, Asako, Desany, Brian A, Collins, Brendan, Tan, John C, Emrich, Scott J, Ferdig, Michael T

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The genome sequence of the wine yeast VIN7 reveals an allotriploid hybrid genome with Saccharomyces cerevisiae and Saccharomyces kudriavzevii origins von Borneman, Anthony R., Desany, Brian A., Riches, David, Affourtit, Jason P., Forgan, Angus H., Pretorius, Isak S., Egholm, Michael, Chambers, Paul J.

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Comparative and functional genomics of Rhodococcus opacus PD630 for biofuels development von Holder, Jason W, Ulrich, Jil C, DeBono, Anthony C, Godfrey, Paul A, Desjardins, Christopher A, Zucker, Jeremy, Zeng, Qiandong, Leach, Alex L B, Ghiviriga, Ion, Dancel, Christine, Abeel, Thomas, Gevers, Dirk, Kodira, Chinnappa D, Desany, Brian, Affourtit, Jason P, Birren, Bruce W, Sinskey, Anthony J

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Regulation of RAD53 by the ATM-Like Kinases MEC1 and TEL1 in Yeast Cell Cycle Checkpoint Pathways von Sanchez, Yolanda, Desany, Brian A., Jones, William J., Liu, Qinghua, Wang, Bin, Elledge, Stephen J.

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Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication von Wu, G Albert, Prochnik, Simon, Jenkins, Jerry, Salse, Jerome, Hellsten, Uffe, Murat, Florent, Perrier, Xavier, Ruiz, Manuel, Scalabrin, Simone, Terol, Javier, Takita, Marco Aurélio, Labadie, Karine, Poulain, Julie, Couloux, Arnaud, Jabbari, Kamel, Cattonaro, Federica, Del Fabbro, Cristian, Pinosio, Sara, Zuccolo, Andrea, Chapman, Jarrod, Grimwood, Jane, Tadeo, Francisco R, Estornell, Leandro H, Muñoz-Sanz, Juan V, Ibanez, Victoria, Herrero-Ortega, Amparo, Aleza, Pablo, Pérez-Pérez, Julián, Ramón, Daniel, Brunel, Dominique, Luro, François, Chen, Chunxian, Farmerie, William G, Desany, Brian, Kodira, Chinnappa, Mohiuddin, Mohammed, Harkins, Tim, Fredrikson, Karin, Burns, Paul, Lomsadze, Alexandre, Borodovsky, Mark, Reforgiato, Giuseppe, Freitas-Astúa, Juliana, Quetier, Francis, Navarro, Luis, Roose, Mikeal, Wincker, Patrick, Schmutz, Jeremy, Morgante, Michele, Machado, Marcos Antonio, Talon, Manuel, Jaillon, Olivier, Ollitrault, Patrick, Gmitter, Frederick, Rokhsar, Daniel

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A map of human genome variation from population-scale sequencing von Abecasis, Gonçalo R, Altshuler, David, Auton, Adam, Brooks, Lisa D, Durbin, Richard M, Gibbs, Richard A, Hurles, Matt E, McVean, Gil A

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The genome of the domesticated apple ( Malus × domestica Borkh.) von Velasco, Riccardo, Zharkikh, Andrey, Affourtit, Jason, Dhingra, Amit, Cestaro, Alessandro, Kalyanaraman, Ananth, Fontana, Paolo, Bhatnagar, Satish K, Troggio, Michela, Pruss, Dmitry, Salvi, Silvio, Pindo, Massimo, Baldi, Paolo, Castelletti, Sara, Cavaiuolo, Marina, Coppola, Giuseppina, Costa, Fabrizio, Cova, Valentina, Dal Ri, Antonio, Goremykin, Vadim, Komjanc, Matteo, Longhi, Sara, Magnago, Pierluigi, Malacarne, Giulia, Malnoy, Mickael, Micheletti, Diego, Moretto, Marco, Perazzolli, Michele, Si-Ammour, Azeddine, Vezzulli, Silvia, Zini, Elena, Eldredge, Glenn, Fitzgerald, Lisa M, Gutin, Natalia, Lanchbury, Jerry, Macalma, Teresita, Mitchell, Jeff T, Reid, Julia, Wardell, Bryan, Kodira, Chinnappa, Chen, Zhoutao, Desany, Brian, Niazi, Faheem, Palmer, Melinda, Koepke, Tyson, Jiwan, Derick, Schaeffer, Scott, Krishnan, Vandhana, Wu, Changjun, Chu, Vu T, King, Stephen T, Vick, Jessica, Tao, Quanzhou, Mraz, Amy, Stormo, Aimee, Stormo, Keith, Bogden, Robert, Ederle, Davide, Stella, Alessandra, Vecchietti, Alberto, Kater, Martin M, Masiero, Simona, Lasserre, Pauline, Lespinasse, Yves, Allan, Andrew C, Bus, Vincent, Chagné, David, Crowhurst, Ross N, Gleave, Andrew P, Lavezzo, Enrico, Fawcett, Jeffrey A, Proost, Sebastian, Rouzé, Pierre, Sterck, Lieven, Toppo, Stefano, Lazzari, Barbara, Hellens, Roger P, Durel, Charles-Eric, Gutin, Alexander, Bumgarner, Roger E, Gardiner, Susan E, Skolnick, Mark, Egholm, Michael, Van de Peer, Yves, Salamini, Francesco, Viola, Roberto

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Mapping copy number variation by population-scale genome sequencing von Mills, Ryan E., Walter, Klaudia, Stewart, Chip, Handsaker, Robert E., Chen, Ken, Alkan, Can, Abyzov, Alexej, Yoon, Seungtai Chris, Ye, Kai, Cheetham, R. Keira, Chinwalla, Asif, Conrad, Donald F., Fu, Yutao, Grubert, Fabian, Hajirasouliha, Iman, Hormozdiari, Fereydoun, Iakoucheva, Lilia M., Iqbal, Zamin, Kang, Shuli, Kidd, Jeffrey M., Konkel, Miriam K., Korn, Joshua, Khurana, Ekta, Kural, Deniz, Lam, Hugo Y. K., Leng, Jing, Li, Ruiqiang, Li, Yingrui, Lin, Chang-Yun, Luo, Ruibang, Mu, Xinmeng Jasmine, Nemesh, James, Peckham, Heather E., Rausch, Tobias, Scally, Aylwyn, Shi, Xinghua, Stromberg, Michael P., Stütz, Adrian M., Urban, Alexander Eckehart, Walker, Jerilyn A., Wu, Jiantao, Zhang, Yujun, Zhang, Zhengdong D., Batzer, Mark A., Ding, Li, Marth, Gabor T., McVean, Gil, Sebat, Jonathan, Snyder, Michael, Wang, Jun, Ye, Kenny, Eichler, Evan E., Gerstein, Mark B., Hurles, Matthew E., Lee, Charles, McCarroll, Steven A., Korbel, Jan O.

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Demographic history and rare allele sharing among human populations von Gravel, Simon, Henn, Brenna M, Gutenkunst, Ryan N, Indap, Amit R, Marth, Gabor T, Clark, Andrew G, Yu, Fuli, Gibbs, Richard A, Bustamante, Carlos D

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Diversity of Human Copy Number Variation and Multicopy Genes von Sudmant, Peter H., Kitzman, Jacob O., Antonacci, Francesca, Alkan, Can, Malig, Maika, Tsalenko, Anya, Sampas, Nick, Bruhn, Laurakay, Shendure, Jay, Eichler, Evan E.

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Variation in genome-wide mutation rates within and between human families von CONRAD, Donald F, KEEBLER, Jonathan E. M, ZILVERSMIT, Martine, CARTWRIGHT, Reed, ROULEAU, Guy A, DALY, Mark, STONE, Eric A, HURLES, Matthew E, AWADALLA, Philip, DEPRISTO, Mark A, LINDSAY, Sarah J, YUJUN ZHANG, CASALS, Ferran, IDAGHDOUR, Youssef, HARTL, Chris L, TORROJA, Carlos, GARIMELLA, Kiran V

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The 1000 Genomes Project: data management and community access von Clarke, Laura, Zheng-Bradley, Xiangqun, Smith, Richard, Kulesha, Eugene, Xiao, Chunlin, Toneva, Iliana, Vaughan, Brendan, Preuss, Don, Leinonen, Rasko, Shumway, Martin, Sherry, Stephen, Flicek, Paul

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Cassava Genome: Current Progress, Future Directions von Prochnik, Simon, Marri, Pradeep Reddy, Desany, Brian, Rabinowicz, Pablo D, Kodira, Chinnappa, Mohiuddin, Mohammed, Rodriguez, Fausto, Fauquet, Claude, Tohme, Joseph, Harkins, Timothy, Rokhsar, Daniel S, Rounsley, Steve

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Detection of low-frequency pretherapy chemokine (CXC motif) receptor 4 (CXCR4)-using HIV-1 with ultra-deep pyrosequencing von ARCHER, John, BRAVERMAN, Michael S, TAILLON, Bruce E, DESANY, Brian, JAMES, Ian, HARRIGAN, P. Richard, LEWIS, Marilyn, ROBERTSON, David L

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Recovery from DNA replicational stress is the essential function of the S-phase checkpoint pathway von Desany, B A, Alcasabas, A A, Bachant, J B, Elledge, S J

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