Chemical rescue of malaria parasites lacking an apicoplast defines organelle function in blood-stage Plasmodium falciparum von Yeh, Ellen, DeRisi, Joseph L

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Temporal analysis of the honey bee microbiome reveals four novel viruses and seasonal prevalence of known viruses, Nosema, and Crithidia von Runckel, Charles, Flenniken, Michelle L, Engel, Juan C, Ruby, J Graham, Ganem, Donald, Andino, Raul, DeRisi, Joseph L

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Zika virus cell tropism in the developing human brain and inhibition by azithromycin von Retallack, Hanna, Di Lullo, Elizabeth, Arias, Carolina, Knopp, Kristeene A., Laurie, Matthew T., Sandoval-Espinosa, Carmen, Leon, Walter R. Mancia, Krencik, Robert, Ullian, Erik M., Spatazza, Julien, Pollen, Alex A., Mandel-Brehm, Caleigh, Nowakowski, Tomasz J., Kriegstein, Arnold R., DeRisi, Joseph L.

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Actionable Diagnosis of Neuroleptospirosis by Next-Generation Sequencing von Wilson, Michael R, Naccache, Samia N, Samayoa, Erik, Biagtan, Mark, Bashir, Hiba, Yu, Guixia, Salamat, Shahriar M, Somasekar, Sneha, Federman, Scot, Miller, Steve, Sokolic, Robert, Garabedian, Elizabeth, Candotti, Fabio, Buckley, Rebecca H, Reed, Kurt D, Meyer, Teresa L, Seroogy, Christine M, Galloway, Renee, Henderson, Sheryl L, Gern, James E, DeRisi, Joseph L, Chiu, Charles Y

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Transcriptome-wide characterization of the eIF4A signature highlights plasticity in translation regulation von Rubio, Claudia A, Weisburd, Benjamin, Holderfield, Matthew, Arias, Carolina, Fang, Eric, DeRisi, Joseph L, Fanidi, Abdallah

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PRICE: software for the targeted assembly of components of (Meta) genomic sequence data von Ruby, J Graham, Bellare, Priya, Derisi, Joseph L

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Pulmonary Metagenomic Sequencing Suggests Missed Infections in Immunocompromised Children von Zinter, Matt S, Dvorak, Christopher C, Mayday, Madeline Y, Iwanaga, Kensho, Ly, Ngoc P, McGarry, Meghan E, Church, Gwynne D, Faricy, Lauren E, Rowan, Courtney M, Hume, Janet R, Steiner, Marie E, Crawford, Emily D, Langelier, Charles, Kalantar, Katrina, Chow, Eric D, Miller, Steve, Shimano, Kristen, Melton, Alexis, Yanik, Gregory A, Sapru, Anil, DeRisi, Joseph L

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Persistence of Ambigrammatic Narnaviruses Requires Translation of the Reverse Open Reading Frame von Retallack, Hanna, Popova, Katerina D., Laurie, Matthew T., Sunshine, Sara, DeRisi, Joseph L.

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The 3A Protein from Multiple Picornaviruses Utilizes the Golgi Adaptor Protein ACBD3 To Recruit PI4KIIIβ von GRENINGER, Alexander L, KNUDSEN, Giselle M, BETEGON, Miguel, BURLINGAME, Alma L, DERISI, Joseph L

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Discovery of a novel polyomavirus in acute diarrheal samples from children von Yu, Guixia, Greninger, Alexander L, Isa, Pavel, Phan, Tung G, Martínez, Miguel Angel, de la Luz Sanchez, Maria, Contreras, Juan Francisco, Santos-Preciado, José Ignacio, Parsonnet, Julie, Miller, Steve, DeRisi, Joseph L, Delwart, Eric, Arias, Carlos F, Chiu, Charles Y

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The transcriptome of the intraerythrocytic developmental cycle of Plasmodium falciparum von Bozdech, Zbynek, Llinás, Manuel, Pulliam, Brian Lee, Wong, Edith D, Zhu, Jingchun, DeRisi, Joseph L

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Successful Treatment of Balamuthia mandrillaris Granulomatous Amebic Encephalitis with Nitroxoline von Spottiswoode, Natasha, Pet, Douglas, Kim, Annie, Gruenberg, Katherine, Shah, Maulik, Ramachandran, Amrutha, Laurie, Matthew T, Zia, Maham, Fouassier, Camille, Boutros, Christine L, Lu, Rufei, Zhang, Yueyuan, Servellita, Venice, Bollen, Andrew, Chiu, Charles Y, Wilson, Michael R, Valdivia, Liza, DeRisi, Joseph L

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Miniaturization and optimization of 384-well compatible RNA sequencing library preparation von Mayday, Madeline Y, Khan, Lillian M, Chow, Eric D, Zinter, Matt S, DeRisi, Joseph L

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Plasmid-free CRISPR/Cas9 genome editing in Plasmodium falciparum confirms mutations conferring resistance to the dihydroisoquinolone clinical candidate SJ733 von Crawford, Emily D, Quan, Jenai, Horst, Jeremy A, Ebert, Daniel, Wu, Wesley, DeRisi, Joseph L

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Illuminating uveitis: metagenomic deep sequencing identifies common and rare pathogens von Doan, Thuy, Wilson, Michael R, Crawford, Emily D, Chow, Eric D, Khan, Lillian M, Knopp, Kristeene A, O'Donovan, Brian D, Xia, Dongxiang, Hacker, Jill K, Stewart, Jay M, Gonzales, John A, Acharya, Nisha R, DeRisi, Joseph L

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Microbiome and Antimicrobial Resistance Gene Dynamics in International Travelers von Langelier, Charles, Graves, Michael, Kalantar, Katrina, Caldera, Saharai, Durrant, Robert, Fisher, Mark, Backman, Richard, Tanner, Windy, DeRisi, Joseph L, Leung, Daniel T

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Identification and manipulation of the molecular determinants influencing poliovirus recombination von Runckel, Charles, Westesson, Oscar, Andino, Raul, DeRisi, Joseph L

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Metagenomic characterization of swine slurry in a North American swine farm operation von Ramesh, Akshaya, Bailey, Emily S., Ahyong, Vida, Langelier, Charles, Phelps, Maira, Neff, Norma, Sit, Rene, Tato, Cristina, DeRisi, Joseph L., Greer, Annette G., Gray, Gregory C.

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Systematic functional interrogation of SARS-CoV-2 host factors using Perturb-seq von Sunshine, Sara, Puschnik, Andreas S., Replogle, Joseph M., Laurie, Matthew T., Liu, Jamin, Zha, Beth Shoshana, Nuñez, James K., Byrum, Janie R., McMorrow, Aidan H., Frieman, Matthew B., Winkler, Juliane, Qiu, Xiaojie, Rosenberg, Oren S., Leonetti, Manuel D., Ye, Chun Jimmie, Weissman, Jonathan S., DeRisi, Joseph L., Hein, Marco Y.

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Unbiased Metagenomic Sequencing for Pediatric Meningitis in Bangladesh Reveals Neuroinvasive Chikungunya Virus Outbreak and Other Unrealized Pathogens von Saha, Senjuti, Ramesh, Akshaya, Kalantar, Katrina, Malaker, Roly, Hasanuzzaman, Md, Khan, Lillian M, Mayday, Madeline Y, Sajib, M S I, Li, Lucy M, Langelier, Charles, Rahman, Hafizur, Crawford, Emily D, Tato, Cristina M, Islam, Maksuda, Juan, Yun-Fang, de Bourcy, Charles, Dimitrov, Boris, Wang, James, Tang, Jennifer, Sheu, Jonathan, Egger, Rebecca, De Carvalho, Tiago Rodrigues, Wilson, Michael R, Saha, Samir K, DeRisi, Joseph L

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