KRSA: An R package and R Shiny web application for an end-to-end upstream kinase analysis of kinome array data von DePasquale, Erica A K, Alganem, Khaled, Bentea, Eduard, Nawreen, Nawshaba, McGuire, Jennifer L, Tomar, Tushar, Naji, Faris, Hilhorst, Riet, Meller, Jaroslaw, McCullumsmith, Robert E

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Mitochondrial variant enrichment from high-throughput single-cell RNA sequencing resolves clonal populations von Miller, Tyler E., Lareau, Caleb A., Verga, Julia A., DePasquale, Erica A. K., Liu, Vincent, Ssozi, Daniel, Sandor, Katalin, Yin, Yajie, Ludwig, Leif S., El Farran, Chadi A., Morgan, Duncan M., Satpathy, Ansuman T., Griffin, Gabriel K., Lane, Andrew A., Love, J. Christopher, Bernstein, Bradley E., Sankaran, Vijay G., van Galen, Peter

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DoubletDecon: Deconvoluting Doublets from Single-Cell RNA-Sequencing Data von DePasquale, Erica A.K., Schnell, Daniel J., Van Camp, Pieter-Jan, Valiente-Alandí, Íñigo, Blaxall, Burns C., Grimes, H. Leighton, Singh, Harinder, Salomonis, Nathan

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Glutamate Neurotransmission in Rodent Models of Traumatic Brain Injury von Dorsett, Christopher R, McGuire, Jennifer L, DePasquale, Erica A K, Gardner, Amanda E, Floyd, Candace L, McCullumsmith, Robert E

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Corticostriatal dysfunction and social interaction deficits in mice lacking the cystine/glutamate antiporter von Bentea, Eduard, Villers, Agnès, Moore, Cynthia, Funk, Adam J., O’Donovan, Sinead M., Verbruggen, Lise, Lara, Olaya, Janssen, Pauline, De Pauw, Laura, Declerck, Noemi B., DePasquale, Erica A. K., Churchill, Madeline J., Sato, Hideyo, Hermans, Emmanuel, Arckens, Lutgarde, Meshul, Charles K., Ris, Laurence, McCullumsmith, Robert E., Massie, Ann

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Plasticity and immune evasion in childhood ALL von DePasquale, Erica A.K., van Galen, Peter

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cellHarmony: cell-level matching and holistic comparison of single-cell transcriptomes von DePasquale, Erica A K, Schnell, Daniel, Dexheimer, Phillip, Ferchen, Kyle, Hay, Stuart, Chetal, Kashish, Valiente-Alandí, Íñigo, Blaxall, Burns C, Grimes, H Leighton, Salomonis, Nathan

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Traumatic Brain Injury Induces Alterations in Cortical Glutamate Uptake without a Reduction in Glutamate Transporter-1 Protein Expression von Dorsett, Christopher R, McGuire, Jennifer L, Niedzielko, Tracy L, DePasquale, Erica A K, Meller, Jaroslaw, Floyd, Candace L, McCullumsmith, Robert E

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WAT3R: recovery of T-cell receptor variable regions from 3′ single-cell RNA-sequencing von Ainciburu, Marina, Morgan, Duncan M, DePasquale, Erica A K, Love, J Christopher, Prósper, Felipe, van Galen, Peter

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Connectivity Analyses of Bioenergetic Changes in Schizophrenia: Identification of Novel Treatments von Sullivan, Courtney R., Mielnik, Catharine A., O’Donovan, Sinead M., Funk, Adam J., Bentea, Eduard, DePasquale, Erica A., Alganem, Khaled, Wen, Zhexing, Haroutunian, Vahram, Katsel, Pavel, Ramsey, Amy J., Meller, Jarek, McCullumsmith, Robert E.

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Single-Cell Multiomics Reveals Clonal T-Cell Expansions and Exhaustion in Blastic Plasmacytoid Dendritic Cell Neoplasm von DePasquale, Erica A K, Ssozi, Daniel, Ainciburu, Marina, Good, Jonathan, Noel, Jenny, Villanueva, Martin A, Couturier, Charles P, Shalek, Alex K, Aranki, Sary F, Mallidi, Hari R, Griffin, Gabriel K, Lane, Andrew A, van Galen, Peter

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Chronic Dysregulation of Cortical and Subcortical Metabolism After Experimental Traumatic Brain Injury von McGuire, Jennifer L., DePasquale, Erica A. K., Watanabe, Miki, Anwar, Fatima, Ngwenya, Laura B., Atluri, Gowtham, Romick-Rosendale, Lindsey E., McCullumsmith, Robert E., Evanson, Nathan K.

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Protocol for Identification and Removal of Doublets with DoubletDecon von DePasquale, Erica A.K., Schnell, Daniel, Chetal, Kashish, Salomonis, Nathan

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Kinase network dysregulation in a human induced pluripotent stem cell model of DISC1 schizophrenia von Bentea, Eduard, Depasquale, Erica A. K, O'Donovan, Sinead M, Sullivan, Courtney R, Simmons, Micah, Meador-Woodruff, James H, Zhou, Ying, Xu, Chongchong, Bai, Bing, Peng, Junmin, Song, Hongjun, Ming, Guo-li, Meller, Jarek, Wen, Zhexing, McCullumsmith, Robert E

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KRSA: An R package and R Shiny web application for an end-to-end upstream kinase analysis of kinome array data von DePasquale, Erica A.K, Alganem, Khaled, Bentea, Eduard, Nawreen, Nawshaba, McGuire, Jennifer L, Tomar, Tushar, Naji, Faris, Hilhorst, Riet, Meller, Jaroslaw, McCullumsmith, Robert E

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F201. KINASE NETWORK DYSREGULATION IN SCHIZOPHRENIA: IMPLICATIONS FOR NEW TREATMENT STRATEGIES von Bentea, Eduard, Depasquale, Erica, Meller, Jarek, Wen, Zhexing, McCullumsmith, Robert E

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Transcriptional Profile of Pyramidal Neurons in Chronic Schizophrenia Reveals Lamina-Specific Dysfunction of Neuronal Immunity von Wu, Xiaojun, Shukla, Rammohan, Alganem, Khaled, Depasquale, Erica, Reigle, James, Simmons, Micah, Hahn, Chang-Gyu, Haroutunian, Vahram, Meller, Jarek, Meador-Woodruff, James, McCullumsmith, Robert

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Transcriptional profile of pyramidal neurons in chronic schizophrenia reveals lamina-specific dysfunction of neuronal immunity von Wu, Xiaojun, Shukla, Rammohan, Alganem, Khaled, Zhang, Xiaolu, Eby, Hunter M., Devine, Emily A., Depasquale, Erica, Reigle, James, Simmons, Micah, Hahn, Margaret K., Au-Yeung, Christy, Asgariroozbehani, Roshanak, Hahn, Chang-Gyu, Haroutunian, Vahram, Meller, Jarek, Meador-Woodruff, James, McCullumsmith, Robert E.

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Abnormalities of signal transduction networks in chronic schizophrenia von McGuire, Jennifer L., Depasquale, Erica A., Funk, Adam J., O’Donnovan, Sinead M., Hasselfeld, Kathryn, Marwaha, Shruti, Hammond, John H., Hartounian, Vahram, Meador-Woodruff, James H., Meller, Jarek, McCullumsmith, Robert E.

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Mitochondrial variant enrichment from high-throughput single-cell RNA-seq resolves clonal populations von Miller, Tyler E., Lareau, Caleb A., Verga, Julia A., DePasquale, Erica A.K., Liu, Vincent, Ssozi, Daniel, Sandor, Katalin, Yin, Yajie, Ludwig, Leif S., El Farran, Chadi A., Morgan, Duncan M., Satpathy, Ansuman T., Griffin, Gabriel K., Lane, Andrew A., Love, J. Christopher, Bernstein, Bradley E., Sankaran, Vijay G., van Galen, Peter

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