GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes von Jin, Jian-Jun, Yu, Wen-Bin, Yang, Jun-Bo, Song, Yu, dePamphilis, Claude W, Yi, Ting-Shuang, Li, De-Zhu

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MicroRNAs from the parasitic plant Cuscuta campestris target host messenger RNAs von Shahid, Saima, Kim, Gunjune, Johnson, Nathan R., Wafula, Eric, Wang, Feng, Coruh, Ceyda, Bernal-Galeano, Vivian, Phifer, Tamia, dePamphilis, Claude W., Westwood, James H., Axtell, Michael J.

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The evolution of the plastid chromosome in land plants: gene content, gene order, gene function von Wicke, Susann, Schneeweiss, Gerald M., dePamphilis, Claude W., Müller, Kai F., Quandt, Dietmar

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Genomic-scale exchange of mRNA between a parasitic plant and its hosts von Kim, Gunjune, LeBlanc, Megan L., Wafula, Eric K., dePamphilis, Claude W., Westwood, James H.

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Genomics of sorghum local adaptation to a parasitic plant von Bellis, Emily S., Kelly, Elizabeth A., Lorts, Claire M., Gao, Huirong, DeLeo, Victoria L., Rouhan, Germinal, Budden, Andrew, Bhaskara, Govinal B., Hu, Zhenbin, Muscarella, Robert, Timko, Michael P., Nebie, Baloua, Runo, Steven M., Chilcoat, N. Doane, Juenger, Thomas E., Morris, Geoffrey P., dePamphilis, Claude W., Lasky, Jesse R.

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RNA viruses in hymenopteran pollinators: evidence of inter-Taxa virus transmission via pollen and potential impact on non-Apis hymenopteran species von Singh, Rajwinder, Levitt, Abby L, Rajotte, Edwin G, Holmes, Edward C, Ostiguy, Nancy, Vanengelsdorp, Dennis, Lipkin, W Ian, Depamphilis, Claude W, Toth, Amy L, Cox-Foster, Diana L

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Mechanistic model of evolutionary rate variation en route to a nonphotosynthetic lifestyle in plants von Wicke, Susann, Müller, Kai F., dePamphilis, Claude W., Quandt, Dietmar, Bellot, Sidonie, Schneeweiss, Gerald M.

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Single-copy nuclear genes place haustorial Hydnoraceae within piperales and reveal a cretaceous origin of multiple parasitic angiosperm lineages von Naumann, Julia, Salomo, Karsten, Der, Joshua P, Wafula, Eric K, Bolin, Jay F, Maass, Erika, Frenzke, Lena, Samain, Marie-Stéphanie, Neinhuis, Christoph, dePamphilis, Claude W, Wanke, Stefan

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Selecting Superior De Novo Transcriptome Assemblies: Lessons Learned by Leveraging the Best Plant Genome von Honaas, Loren A, Wafula, Eric K, Wickett, Norman J, Der, Joshua P, Zhang, Yeting, Edger, Patrick P, Altman, Naomi S, Pires, J Chris, Leebens-Mack, James H, dePamphilis, Claude W

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Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryza and their phylogenetic utility across various taxonomic levels von Duarte, Jill M, Wall, P Kerr, Edger, Patrick P, Landherr, Lena L, Ma, Hong, Pires, J Chris, Leebens-Mack, Jim, dePamphilis, Claude W

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Extra-large G proteins have extra-large effects on agronomic traits and stress tolerance in maize and rice von Cantos, Christian F., dePamphilis, Claude W., Assmann, Sarah M.

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De novo characterization of the gametophyte transcriptome in bracken fern, Pteridium aquilinum von Der, Joshua P, Barker, Michael S, Wickett, Norman J, dePamphilis, Claude W, Wolf, Paul G

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Local Auxin Biosynthesis Mediated by a YUCCA Flavin Monooxygenase Regulates Haustorium Development in the Parasitic Plant Phtheirospermum japonicum von Ishida, Juliane K., Wakatake, Takanori, Yoshida, Satoko, Takebayashi, Yumiko, Kasahara, Hiroyuki, Wafula, Eric, de Pamphilis, Claude W., Namba, Shigetou, Shirasu, Ken

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The evolution of parasitism in plants von Westwood, James H., Yoder, John I., Timko, Michael P., dePamphilis, Claude W.

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PlantTribes2: Tools for comparative gene family analysis in plant genomics von Wafula, Eric K, Zhang, Huiting, Von Kuster, Gregory, Leebens-Mack, James H, Honaas, Loren A, dePamphilis, Claude W

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Genomic structural variants constrain and facilitate adaptation in natural populations of Theobroma cacao, the chocolate tree von Hämälä, Tuomas, Wafula, Eric K., Guiltinan, Mark J., Ralph, Paula E., dePamphilis, Claude W., Tiffin, Peter

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Comparison of next generation sequencing technologies for transcriptome characterization von Wall, P Kerr, Leebens-Mack, Jim, Chanderbali, André S, Barakat, Abdelali, Wolcott, Erik, Liang, Haiying, Landherr, Lena, Tomsho, Lynn P, Hu, Yi, Carlson, John E, Ma, Hong, Schuster, Stephan C, Soltis, Douglas E, Soltis, Pamela S, Altman, Naomi, dePamphilis, Claude W

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Transcriptomes of the Parasitic Plant Family Orobanchaceae Reveal Surprising Conservation of Chlorophyll Synthesis von Wickett, Norman J., Honaas, Loren A., Wafula, Eric K., Das, Malay, Huang, Kan, Wu, Biao, Landherr, Lena, Timko, Michael P., Yoder, John, Westwood, James H., dePamphilis, Claude W.

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Mitochondrial DNA suggests at least 11 origins of parasitism in angiosperms and reveals genomic chimerism in parasitic plants von Barkman, Todd J, McNeal, Joel R, Lim, Seok-Hong, Coat, Gwen, Croom, Henrietta B, Young, Nelson D, Depamphilis, Claude W

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Conservation and divergence of microRNAs in Populus von Barakat, Abdelali, Wall, Phillip K, Diloreto, Scott, Depamphilis, Claude W, Carlson, John E

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