Evolution of Human-Specific Neural SRGAP2 Genes by Incomplete Segmental Duplication von Dennis, Megan Y., Nuttle, Xander, Sudmant, Peter H., Antonacci, Francesca, Graves, Tina A., Nefedov, Mikhail, Rosenfeld, Jill A., Sajjadian, Saba, Malig, Maika, Kotkiewicz, Holland, Curry, Cynthia J., Shafer, Susan, Shaffer, Lisa G., de Jong, Pieter J., Wilson, Richard K., Eichler, Evan E.

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Psychedelics Promote Structural and Functional Neural Plasticity von Ly, Calvin, Greb, Alexandra C., Cameron, Lindsay P., Wong, Jonathan M., Barragan, Eden V., Wilson, Paige C., Burbach, Kyle F., Soltanzadeh Zarandi, Sina, Sood, Alexander, Paddy, Michael R., Duim, Whitney C., Dennis, Megan Y., McAllister, A. Kimberley, Ori-McKenney, Kassandra M., Gray, John A., Olson, David E.

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Resolving the complexity of the human genome using single-molecule sequencing von Chaisson, Mark J. P., Huddleston, John, Dennis, Megan Y., Sudmant, Peter H., Malig, Maika, Hormozdiari, Fereydoun, Antonacci, Francesca, Surti, Urvashi, Sandstrom, Richard, Boitano, Matthew, Landolin, Jane M., Stamatoyannopoulos, John A., Hunkapiller, Michael W., Korlach, Jonas, Eichler, Evan E.

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Refinement and Discovery of New Hotspots of Copy-Number Variation Associated with Autism Spectrum Disorder von Girirajan, Santhosh, Dennis, Megan Y., Baker, Carl, Malig, Maika, Coe, Bradley P., Campbell, Catarina D., Mark, Kenneth, Vu, Tiffany H., Alkan, Can, Cheng, Ze, Biesecker, Leslie G., Bernier, Raphael, Eichler, Evan E.

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Human local adaptation of the TRPM8 cold receptor along a latitudinal cline von Key, Felix M, Abdul-Aziz, Muslihudeen A, Mundry, Roger, Peter, Benjamin M, Sekar, Aarthi, D'Amato, Mauro, Dennis, Megan Y, Schmidt, Joshua M, Andrés, Aida M

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Reconstructing complex regions of genomes using long-read sequencing technology von Huddleston, John, Ranade, Swati, Malig, Maika, Antonacci, Francesca, Chaisson, Mark, Hon, Lawrence, Sudmant, Peter H, Graves, Tina A, Alkan, Can, Dennis, Megan Y, Wilson, Richard K, Turner, Stephen W, Korlach, Jonas, Eichler, Evan E

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Selection on a variant associated with improved viral clearance drives local, adaptive pseudogenization of interferon lambda 4 (IFNL4) von Key, Felix M, Peter, Benjamin, Dennis, Megan Y, Huerta-Sánchez, Emilia, Tang, Wei, Prokunina-Olsson, Ludmila, Nielsen, Rasmus, Andrés, Aida M

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Evaluation of CRISPR gene-editing tools in zebrafish von Uribe-Salazar, José M, Kaya, Gulhan, Sekar, Aadithya, Weyenberg, KaeChandra, Ingamells, Cole, Dennis, Megan Y

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FixItFelix: improving genomic analysis by fixing reference errors von Behera, Sairam, LeFaive, Jonathon, Orchard, Peter, Mahmoud, Medhat, Paulin, Luis F, Farek, Jesse, Soto, Daniela C, Parker, Stephen C J, Smith, Albert V, Dennis, Megan Y, Zook, Justin M, Sedlazeck, Fritz J

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Placental methylome reveals a 22q13.33 brain regulatory gene locus associated with autism von Zhu, Yihui, Gomez, J Antonio, Laufer, Benjamin I, Mordaunt, Charles E, Mouat, Julia S, Soto, Daniela C, Dennis, Megan Y, Benke, Kelly S, Bakulski, Kelly M, Dou, John, Marathe, Ria, Jianu, Julia M, Williams, Logan A, Gutierrez Fugón, Orangel J, Walker, Cheryl K, Ozonoff, Sally, Daniels, Jason, Grosvenor, Luke P, Volk, Heather E, Feinberg, Jason I, Fallin, M Daniele, Hertz-Picciotto, Irva, Schmidt, Rebecca J, Yasui, Dag H, LaSalle, Janine M

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Detection of structural variants and indels within exome data von Karakoc, Emre, Alkan, Can, O'Roak, Brian J, Dennis, Megan Y, Vives, Laura, Mark, Kenneth, Rieder, Mark J, Nickerson, Debbie A, Eichler, Evan E

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Balancing selection maintains a form of ERAP2 that undergoes nonsense-mediated decay and affects antigen presentation von Andrés, Aida M, Dennis, Megan Y, Kretzschmar, Warren W, Cannons, Jennifer L, Lee-Lin, Shih-Queen, Hurle, Belen, Schwartzberg, Pamela L, Williamson, Scott H, Bustamante, Carlos D, Nielsen, Rasmus, Clark, Andrew G, Green, Eric D

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The birth of a human-specific neural gene by incomplete duplication and gene fusion von Dougherty, Max L, Nuttle, Xander, Penn, Osnat, Nelson, Bradley J, Huddleston, John, Baker, Carl, Harshman, Lana, Duyzend, Michael H, Ventura, Mario, Antonacci, Francesca, Sandstrom, Richard, Dennis, Megan Y, Eichler, Evan E

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Deciphering the role of structural variation in human evolution: a functional perspective von Karageorgiou, Charikleia, Gokcumen, Omer, Dennis, Megan Y

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Human adaptation and evolution by segmental duplication von Dennis, Megan Y, Eichler, Evan E

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A common variant associated with dyslexia reduces expression of the KIAA0319 gene von Dennis, Megan Y, Paracchini, Silvia, Scerri, Thomas S, Prokunina-Olsson, Ludmila, Knight, Julian C, Wade-Martins, Richard, Coggill, Penny, Beck, Stephan, Green, Eric D, Monaco, Anthony P

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Telomere-to-telomere assembly of a complete human X chromosome von Miga, Karen H., Koren, Sergey, Rhie, Arang, Vollger, Mitchell R., Gershman, Ariel, Bzikadze, Andrey, Brooks, Shelise, Howe, Edmund, Porubsky, David, Logsdon, Glennis A., Schneider, Valerie A., Potapova, Tamara, Wood, Jonathan, Chow, William, Armstrong, Joel, Fredrickson, Jeanne, Pak, Evgenia, Tigyi, Kristof, Kremitzki, Milinn, Markovic, Christopher, Maduro, Valerie, Dutra, Amalia, Bouffard, Gerard G., Chang, Alexander M., Hansen, Nancy F., Wilfert, Amy B., Thibaud-Nissen, Françoise, Schmitt, Anthony D., Belton, Jon-Matthew, Selvaraj, Siddarth, Dennis, Megan Y., Soto, Daniela C., Sahasrabudhe, Ruta, Kaya, Gulhan, Quick, Josh, Loman, Nicholas J., Holmes, Nadine, Loose, Matthew, Surti, Urvashi, Risques, Rosa ana, Graves Lindsay, Tina A., Fulton, Robert, Hall, Ira, Paten, Benedict, Howe, Kerstin, Timp, Winston, Young, Alice, Mullikin, James C., Pevzner, Pavel A., Gerton, Jennifer L., Sullivan, Beth A., Eichler, Evan E., Phillippy, Adam M.

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Transforming our understanding of species-specific gene regulation von Dennis, Megan Y.

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A complete reference genome improves analysis of human genetic variation von Aganezov, Sergey, Yan, Stephanie M, Soto, Daniela C, Kirsche, Melanie, Zarate, Samantha, Avdeyev, Pavel, Taylor, Dylan J, Shafin, Kishwar, Shumate, Alaina, Xiao, Chunlin, Wagner, Justin, McDaniel, Jennifer, Olson, Nathan D, Sauria, Michael E G, Vollger, Mitchell R, Rhie, Arang, Meredith, Melissa, Martin, Skylar, Lee, Joyce, Koren, Sergey, Rosenfeld, Jeffrey A, Paten, Benedict, Layer, Ryan, Chin, Chen-Shan, Sedlazeck, Fritz J, Hansen, Nancy F, Miller, Danny E, Phillippy, Adam M, Miga, Karen H, McCoy, Rajiv C, Dennis, Megan Y, Zook, Justin M, Schatz, Michael C

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Complete genomic and epigenetic maps of human centromeres von Altemose, Nicolas, Logsdon, Glennis A, Bzikadze, Andrey V, Sidhwani, Pragya, Langley, Sasha A, Caldas, Gina V, Hoyt, Savannah J, Uralsky, Lev, Ryabov, Fedor D, Shew, Colin J, Sauria, Michael E G, Borchers, Matthew, Gershman, Ariel, Mikheenko, Alla, Shepelev, Valery A, Dvorkina, Tatiana, Kunyavskaya, Olga, Vollger, Mitchell R, Rhie, Arang, McCartney, Ann M, Asri, Mobin, Lorig-Roach, Ryan, Shafin, Kishwar, Lucas, Julian K, Aganezov, Sergey, Olson, Daniel, de Lima, Leonardo Gomes, Potapova, Tamara, Hartley, Gabrielle A, Haukness, Marina, Kerpedjiev, Peter, Gusev, Fedor, Tigyi, Kristof, Brooks, Shelise, Young, Alice, Nurk, Sergey, Koren, Sergey, Salama, Sofie R, Paten, Benedict, Rogaev, Evgeny I, Streets, Aaron, Karpen, Gary H, Dernburg, Abby F, Sullivan, Beth A, Straight, Aaron F, Wheeler, Travis J, Gerton, Jennifer L, Eichler, Evan E, Phillippy, Adam M, Timp, Winston, Dennis, Megan Y, O'Neill, Rachel J, Zook, Justin M, Schatz, Michael C, Pevzner, Pavel A, Diekhans, Mark, Langley, Charles H, Alexandrov, Ivan A, Miga, Karen H

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