Analysis of Microbial Composition of Edible Insect Products Available for Human Consumption within the United States Using Traditional Microbiological Methods and Whole Genome Sequ... von Pal, Amrit, Mann, Amy, den Bakker, Henk C.

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Comparative genomics of the bacterial genus Listeria: Genome evolution is characterized by limited gene acquisition and limited gene loss von den Bakker, Henk C, Cummings, Craig A, Ferreira, Vania, Vatta, Paolo, Orsi, Renato H, Degoricija, Lovorka, Barker, Melissa, Petrauskene, Olga, Furtado, Manohar R, Wiedmann, Martin

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Listeria monocytogenes lineages: Genomics, evolution, ecology, and phenotypic characteristics von Orsi, Renato H, Bakker, Henk C. den, Wiedmann, Martin

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Genomic epidemiology of Salmonella enterica serotype Enteritidis based on population structure of prevalent lineages von Deng, Xiangyu, Desai, Prerak T, den Bakker, Henk C, Mikoleit, Matthew, Tolar, Beth, Trees, Eija, Hendriksen, Rene S, Frye, Jonathan G, Porwollik, Steffen, Weimer, Bart C, Wiedmann, Martin, Weinstock, George M, Fields, Patricia I, McClelland, Michael

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Ultrafast search of all deposited bacterial and viral genomic data von Bradley, Phelim, den Bakker, Henk C., Rocha, Eduardo P. C., McVean, Gil, Iqbal, Zamin

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Whole-Genome Sequencing Allows for Improved Identification of Persistent Listeria monocytogenes in Food-Associated Environments von Stasiewicz, Matthew J, Oliver, Haley F, Wiedmann, Martin, den Bakker, Henk C

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A Whole-Genome Single Nucleotide Polymorphism-Based Approach To Trace and Identify Outbreaks Linked to a Common Salmonella enterica subsp. enterica Serovar Montevideo Pulsed-Field... von DEN BAKKER, Henk C, MORENO SWITT, Andrea I, SCHOONMAKER-BOPP, Dianna, MUSSER, Kimberlee A, VILLAMIL, Elizabeth, WAECHTER, Haena, KORNSTEIN, Laura, FURTADO, Manohar R, WIEDMANN, Martin, CUMMINGS, Craig A, HOELZER, Karin, DEGORICIJA, Lovorka, RODRIGUEZ-RIVERA, Lorraine D, WRIGHT, Emily M, RIXUN FANG, DAVIS, Margaret, ROOT, Tim

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Evolutionary dynamics of the accessory genome of Listeria monocytogenes von den Bakker, Henk C, Desjardins, Christopher A, Griggs, Allison D, Peters, Joseph E, Zeng, Qiandong, Young, Sarah K, Kodira, Chinnappa D, Yandava, Chandri, Hepburn, Theresa A, Haas, Brian J, Birren, Bruce W, Wiedmann, Martin

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Identification and characterization of novel Salmonella mobile elements involved in the dissemination of genes linked to virulence and transmission von Moreno Switt, Andrea I, den Bakker, Henk C, Cummings, Craig A, Rodriguez-Rivera, Lorraine D, Govoni, Gregory, Raneiri, Matthew L, Degoricija, Lovorka, Brown, Stephanie, Hoelzer, Karin, Peters, Joseph E, Bolchacova, Elena, Furtado, Manohar R, Wiedmann, Martin

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Characterizing the gut microbiome of broilers raised under conventional and no antibiotics ever practices von Novoa Rama, Estefanía, Bailey, Matthew, Kumar, Sanjay, Leone, Cortney, den Bakker, Henk C., Thippareddi, Harshavardhan, Singh, Manpreet

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Dissemination of the mcr-1 colistin resistance gene von Webb, Hattie E, Granier, Sophie A, Marault, Muriel, Millemann, Yves, den Bakker, Henk C, Nightingale, Kendra K, Bugarel, Marie, Ison, Sarah A, Scott, H Morgan, Loneragan, Guy H

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Selection and Characterization of Phage-Resistant Mutant Strains of Listeria monocytogenes Reveal Host Genes Linked to Phage Adsorption von Denes, Thomas, den Bakker, Henk C, Tokman, Jeffrey I, Guldimann, Claudia, Wiedmann, Martin

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Rapid whole-genome sequencing for surveillance of Salmonella enterica serovar enteritidis von den Bakker, Henk C, Allard, Marc W, Bopp, Dianna, Brown, Eric W, Fontana, John, Iqbal, Zamin, Kinney, Aristea, Limberger, Ronald, Musser, Kimberlee A, Shudt, Matthew, Strain, Errol, Wiedmann, Martin, Wolfgang, William J

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Carbapenem-Resistant Bacteria Recovered from Faeces of Dairy Cattle in the High Plains Region of the USA von Webb, Hattie E, Bugarel, Marie, den Bakker, Henk C, Nightingale, Kendra K, Granier, Sophie A, Scott, H Morgan, Loneragan, Guy H

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Identification and Characterization of Psychrotolerant Sporeformers Associated with Fluid Milk Production and Processing von IVY, Reid A, RANIERI, Matthew L, MARTIN, Nicole H, DEN BAKKER, Henk C, XAVIER, Bruno M, WIEDMANN, Martin, BOOR, Kathryn J

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High-resolution genomic comparisons within Salmonella enterica serotypes derived from beef feedlot cattle: parsing the roles of cattle source, pen, animal, sample type and producti... von Levent, Gizem, Schlochtermeier, Ashlynn, Ives, Samuel E, Norman, Keri N, Lawhon, Sara D, Loneragan, Guy H, Anderson, Robin C, Vinasco, Javier, Bakker, Henk C den, Scott, H Morgan

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Comparison of Typing Methods with a New Procedure Based on Sequence Characterization for Salmonella Serovar Prediction von Ranieri, Matthew L, Shi, Chunlei, Moreno Switt, Andrea I, den Bakker, Henk C, Wiedmann, Martin

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Pre-harvest internalization and surface survival of Salmonella and Escherichia coli O157:H7 sprayed onto different lettuce cultivars under field and growth chamber conditions von Erickson, Marilyn C., Liao, Jye-Yin, Payton, Alison S., Cook, Peter W., Den Bakker, Henk C., Bautista, Jesus, Pérez, Juan Carlos Díaz

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Transcriptomic Analysis of the Adaptation of Listeria monocytogenes to Growth on Vacuum-Packed Cold Smoked Salmon von Tang, Silin, Orsi, Renato H, den Bakker, Henk C, Wiedmann, Martin, Boor, Kathryn J, Bergholz, Teresa M

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Quantitative dynamics of Salmonella and E. coli in feces of feedlot cattle treated with ceftiofur and chlortetracycline von Ohta, Naomi, Norby, Bo, Loneragan, Guy H, Vinasco, Javier, den Bakker, Henk C, Lawhon, Sara D, Norman, Keri N, Scott, Harvey M

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