Ultrafast search of all deposited bacterial and viral genomic data von Bradley, Phelim, den Bakker, Henk C., Rocha, Eduardo P. C., McVean, Gil, Iqbal, Zamin

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Listeria monocytogenes lineages: Genomics, evolution, ecology, and phenotypic characteristics von Orsi, Renato H, Bakker, Henk C. den, Wiedmann, Martin

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Analysis of Microbial Composition of Edible Insect Products Available for Human Consumption within the United States Using Traditional Microbiological Methods and Whole Genome Sequ... von Pal, Amrit, Mann, Amy, den Bakker, Henk C.

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Quantitative dynamics of Salmonella and E. coli in feces of feedlot cattle treated with ceftiofur and chlortetracycline von Ohta, Naomi, Norby, Bo, Loneragan, Guy H, Vinasco, Javier, den Bakker, Henk C, Lawhon, Sara D, Norman, Keri N, Scott, Harvey M

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Fasten: a toolkit for streaming operations on fastq files von Katz, Lee S, Phan, John, den Bakker, Henk C

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Listeria booriae sp. nov. and Listeria newyorkensis sp. nov., from food processing environments in the USA von Weller, Daniel, Andrus, Alexis, Wiedmann, Martin, den Bakker, Henk C

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Genomic Diversity of Listeria monocytogenes Isolated from Clinical and Non-Clinical Samples in Chile von Toledo, Viviana, den Bakker, Henk C, Hormazábal, Juan Carlos, González-Rocha, Gerardo, Bello-Toledo, Helia, Toro, Magaly, Moreno-Switt, Andrea I

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Dissemination of the mcr-1 colistin resistance gene von Webb, Hattie E, Granier, Sophie A, Marault, Muriel, Millemann, Yves, den Bakker, Henk C, Nightingale, Kendra K, Bugarel, Marie, Ison, Sarah A, Scott, H Morgan, Loneragan, Guy H

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Sepia, a taxonomy oriented read classifier in Rust von den Bakker, Henk C, Katz, Lee S

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Genomic Epidemiology: Whole-Genome-Sequencing-Powered Surveillance and Outbreak Investigation of Foodborne Bacterial Pathogens von Deng, Xiangyu, den Bakker, Henk C, Hendriksen, Rene S

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Carbapenem-Resistant Bacteria Recovered from Faeces of Dairy Cattle in the High Plains Region of the USA von Webb, Hattie E, Bugarel, Marie, den Bakker, Henk C, Nightingale, Kendra K, Granier, Sophie A, Scott, H Morgan, Loneragan, Guy H

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Genomic characterization of Salmonella Cerro ST367, an emerging Salmonella subtype in cattle in the United States von Rodriguez-Rivera, Lorraine D, Moreno Switt, Andrea I, Degoricija, Lovorka, Fang, Rixun, Cummings, Craig A, Furtado, Manohar R, Wiedmann, Martin, den Bakker, Henk C

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Multilocus sequence typing of outbreak-associated Listeria monocytogenes isolates to identify epidemic clones von den Bakker, Henk C, Fortes, Esther D, Wiedmann, Martin

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Comparative genomics of the bacterial genus Listeria: Genome evolution is characterized by limited gene acquisition and limited gene loss von den Bakker, Henk C, Cummings, Craig A, Ferreira, Vania, Vatta, Paolo, Orsi, Renato H, Degoricija, Lovorka, Barker, Melissa, Petrauskene, Olga, Furtado, Manohar R, Wiedmann, Martin

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Genomic epidemiology of Salmonella enterica serotype Enteritidis based on population structure of prevalent lineages von Deng, Xiangyu, Desai, Prerak T, den Bakker, Henk C, Mikoleit, Matthew, Tolar, Beth, Trees, Eija, Hendriksen, Rene S, Frye, Jonathan G, Porwollik, Steffen, Weimer, Bart C, Wiedmann, Martin, Weinstock, George M, Fields, Patricia I, McClelland, Michael

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Genomics tools in microbial food safety von Stasiewicz, Matthew J, den Bakker, Henk C, Wiedmann, Martin

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Whole-Genome Sequencing Allows for Improved Identification of Persistent Listeria monocytogenes in Food-Associated Environments von Stasiewicz, Matthew J, Oliver, Haley F, Wiedmann, Martin, den Bakker, Henk C

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A Whole-Genome Single Nucleotide Polymorphism-Based Approach To Trace and Identify Outbreaks Linked to a Common Salmonella enterica subsp. enterica Serovar Montevideo Pulsed-Field... von DEN BAKKER, Henk C, MORENO SWITT, Andrea I, SCHOONMAKER-BOPP, Dianna, MUSSER, Kimberlee A, VILLAMIL, Elizabeth, WAECHTER, Haena, KORNSTEIN, Laura, FURTADO, Manohar R, WIEDMANN, Martin, CUMMINGS, Craig A, HOELZER, Karin, DEGORICIJA, Lovorka, RODRIGUEZ-RIVERA, Lorraine D, WRIGHT, Emily M, RIXUN FANG, DAVIS, Margaret, ROOT, Tim

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Evolutionary dynamics of the accessory genome of Listeria monocytogenes von den Bakker, Henk C, Desjardins, Christopher A, Griggs, Allison D, Peters, Joseph E, Zeng, Qiandong, Young, Sarah K, Kodira, Chinnappa D, Yandava, Chandri, Hepburn, Theresa A, Haas, Brian J, Birren, Bruce W, Wiedmann, Martin

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Identification and characterization of novel Salmonella mobile elements involved in the dissemination of genes linked to virulence and transmission von Moreno Switt, Andrea I, den Bakker, Henk C, Cummings, Craig A, Rodriguez-Rivera, Lorraine D, Govoni, Gregory, Raneiri, Matthew L, Degoricija, Lovorka, Brown, Stephanie, Hoelzer, Karin, Peters, Joseph E, Bolchacova, Elena, Furtado, Manohar R, Wiedmann, Martin

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