Genome-scale metabolic rewiring improves titers rates and yields of the non-native product indigoidine at scale von Banerjee, Deepanwita, Eng, Thomas, Lau, Andrew K., Sasaki, Yusuke, Wang, Brenda, Chen, Yan, Prahl, Jan-Philip, Singan, Vasanth R., Herbert, Robin A., Liu, Yuzhong, Tanjore, Deepti, Petzold, Christopher J., Keasling, Jay D., Mukhopadhyay, Aindrila

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Constraints-based analysis identifies NAD+ recycling through metabolic reprogramming in antibiotic resistant Chromobacterium violaceum von Banerjee, Deepanwita, Raghunathan, Anu

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Integration of genome-scale metabolic model with biorefinery process model reveals market-competitive carbon-negative sustainable aviation fuel utilizing microbial cell mass lipids... von Baral, Nawa Raj, Banerjee, Deepanwita, Mukhopadhyay, Aindrila, Simmons, Blake A., Singer, Steven W., Scown, Corinne D.

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Maximizing microbial bioproduction from sustainable carbon sources using iterative systems engineering von Eng, Thomas, Banerjee, Deepanwita, Menasalvas, Javier, Chen, Yan, Gin, Jennifer, Choudhary, Hemant, Baidoo, Edward, Chen, Jian Hua, Ekman, Axel, Kakumanu, Ramu, Diercks, Yuzhong Liu, Codik, Alex, Larabell, Carolyn, Gladden, John, Simmons, Blake A., Keasling, Jay D., Petzold, Christopher J., Mukhopadhyay, Aindrila

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Investigation of Bar-seq as a method to study population dynamics of Saccharomyces cerevisiae deletion library during bioreactor cultivation von Wehrs, Maren, Thompson, Mitchell G, Banerjee, Deepanwita, Prahl, Jan-Philip, Morella, Norma M, Barcelos, Carolina A, Moon, Jadie, Costello, Zak, Keasling, Jay D, Shih, Patrick M, Tanjore, Deepti, Mukhopadhyay, Aindrila

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Tuning a high performing multiplexed-CRISPRi Pseudomonas putida strain to further enhance indigoidine production von Czajka, Jeffrey J., Banerjee, Deepanwita, Eng, Thomas, Menasalvas, Javier, Yan, Chunsheng, Munoz, Nathalie Munoz, Poirier, Brenton C., Kim, Young-Mo, Baker, Scott E., Tang, Yinjie J., Mukhopadhyay, Aindrila

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Genomics Characterization of an Engineered Corynebacterium glutamicum in Bioreactor Cultivation Under Ionic Liquid Stress von Banerjee, Deepanwita, Eng, Thomas, Sasaki, Yusuke, Srinivasan, Aparajitha, Oka, Asun, Herbert, Robin A., Trinh, Jessica, Singan, Vasanth R., Sun, Ning, Putnam, Dan, Scown, Corinne D., Simmons, Blake, Mukhopadhyay, Aindrila

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Constraints-based analysis identifies NAD.sup.+ recycling through metabolic reprogramming in antibiotic resistant Chromobacterium violaceum von Banerjee, Deepanwita, Raghunathan, Anu

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Perspectives in growth production trade-off in microbial bioproduction von Banerjee, Deepanwita, Mukhopadhyay, Aindrila

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Knowledge, attitude and practice of antibiotic use and antimicrobial resistance: a study post the 'Red Line' initiative von Banerjee, Deepanwita, Raghunathan, Anu

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Systems and synthetic biology tools for advanced bioproduction hosts von Chen, Yan, Banerjee, Deepanwita, Mukhopadhyay, Aindrila, Petzold, Christopher J

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Improving microbial bioproduction under low-oxygen conditions von Kulakowski, Shawn, Banerjee, Deepanwita, Scown, Corinne D, Mukhopadhyay, Aindrila

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Economic and Environmental Trade-Offs of Simultaneous Sugar and Lignin Utilization for Biobased Fuels and Chemicals von Baral, Nawa Raj, Banerjee, Deepanwita, Mukhopadhyay, Aindrila, Simmons, Blake A., Singer, Steven W., Scown, Corinne D.

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Sustainable production of 2,3,5,6-Tetramethylpyrazine at high titer in engineered Corynebacterium glutamicum von Srinivasan, Aparajitha, Chen-Xiao, Kevin, Banerjee, Deepanwita, Oka, Asun, Pidatala, Venkataramana R, Eudes, Aymerick, Simmons, Blake A, Eng, Thomas, Mukhopadhyay, Aindrila

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Perspectives for self-driving labs in synthetic biology von Martin, Hector G, Radivojevic, Tijana, Zucker, Jeremy, Bouchard, Kristofer, Sustarich, Jess, Peisert, Sean, Arnold, Dan, Hillson, Nathan, Babnigg, Gyorgy, Marti, Jose M, Mungall, Christopher J, Beckham, Gregg T, Waldburger, Lucas, Carothers, James, Sundaram, ShivShankar, Agarwal, Deb, Simmons, Blake A, Backman, Tyler, Banerjee, Deepanwita, Tanjore, Deepti, Ramakrishnan, Lavanya, Singh, Anup

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Engineering Pseudomonas putida for efficient aromatic conversion to bioproduct using high throughput screening in a bioreactor von Eng, Thomas, Banerjee, Deepanwita, Lau, Andrew K., Bowden, Emily, Herbert, Robin A., Trinh, Jessica, Prahl, Jan-Philip, Deutschbauer, Adam, Tanjore, Deepti, Mukhopadhyay, Aindrila

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Perspective on Lignin Conversion Strategies That Enable Next Generation Biorefineries von Shrestha, Shilva, Goswami, Shubhasish, Banerjee, Deepanwita, Garcia, Valentina, Zhou, Elizabeth, Olmsted, Charles N., Majumder, Erica L.‐W., Kumar, Deepak, Awasthi, Deepika, Mukhopadhyay, Aindrila, Singer, Steven W., Gladden, John M., Simmons, Blake A., Choudhary, Hemant

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Integration of Genome-Scale Metabolic Model with Biorefinery Process Model Reveals Market-Competitive Carbon-Negative Sustainable Aviation Fuel Utilizing Microbial Cell Mass Lipids... von Nawa Raj Baral, Deepanwita Banerjee, Aindrila Mukhopadhyay, Blake A. Simmons, Steven W. Singer, Corinne D. Scown

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Genome-scale and pathway engineering for the sustainable aviation fuel precursor isoprenol production in Pseudomonas putida von Banerjee, Deepanwita, Yunus, Ian S., Wang, Xi, Kim, Jinho, Srinivasan, Aparajitha, Menchavez, Russel, Chen, Yan, Gin, Jennifer W., Petzold, Christopher J., Martin, Hector Garcia, Magnuson, Jon K., Adams, Paul D., Simmons, Blake A., Mukhopadhyay, Aindrila, Kim, Joonhoon, Lee, Taek Soon

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Integrated constraints based analysis of an engineered violacein pathway in Escherichia coli von Immanuel, Selva Rupa Christinal, Banerjee, Deepanwita, Rajankar, Mayooreshwar P., Raghunathan, Anu

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