An Escherichia coli ST131 pangenome atlas reveals population structure and evolution across 4,071 isolates von Decano, Arun Gonzales, Downing, Tim

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Complete Assembly of Escherichia coli Sequence Type 131 Genomes Using Long Reads Demonstrates Antibiotic Resistance Gene Variation within Diverse Plasmid and Chromosomal Contexts von Decano, Arun Gonzales, Ludden, Catherine, Feltwell, Theresa, Judge, Kim, Parkhill, Julian, Downing, Tim

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Whole Genome Sequencing and Molecular Epidemiology of Clinical Isolates of Staphylococcus aureus from Algeria von Namoune, Rachida, Djebbar, Abla, Mekler, Rebecca, McHugh, Martin, Bekara, Mohammed El Amine, Decano, Arun, Holden, Matthew T G, Sebaihia, Mohammed

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Protocol for an interdisciplinary cross-sectional study investigating the social, biological and community-level drivers of antimicrobial resistance (AMR): Holistic Approach to Unr... von Asiimwe, Benon B, Kiiru, John, Mshana, Stephen E, Neema, Stella, Keenan, Katherine, Kesby, Mike, Mwanga, Joseph R, Sloan, Derek J, Mmbaga, Blandina T, Smith, V Anne, Gillespie, Stephen H, Lynch, Andy G, Sandeman, Alison, Stelling, John, Elliott, Alison, Aanensen, David M, Kibiki, Gibson E, Sabiiti, Wilber, Holden, Matthew T G, Kansiime, Catherine, Mushi, Martha F, Decano, Arun Gonzales, Green, Dominique L, Mwaniki, John, Ntinginya, Nyanda E, Bazira, Joel

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Evaluation of the zoonotic potential of a novel reassortant H1N2 swine influenza virus with gene constellation derived from multiple viral sources von Lee, Jee Hoon, Pascua, Philippe Noriel Q., Decano, Arun G., Kim, Se Mi, Park, Su-Jin, Kwon, Hyeok-Il, Kim, Eun-Ha, Kim, Young-Il, Kim, HyongKyu, Kim, Seok-Yong, Song, Min-Suk, Jang, Hyung-Kwan, Park, Bong Kyun, Choi, Young Ki

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Pan-Resistome Characterization of Uropathogenic Escherichia coli and Klebsiella pneumoniae Strains Circulating in Uganda and Kenya, Isolated from 2017-2018 von Decano, Arun Gonzales, Pettigrew, Kerry, Sabiiti, Wilber, Sloan, Derek J, Neema, Stella, Bazira, Joel, Kiiru, John, Onyango, Hellen, Asiimwe, Benon, Holden, Matthew T G

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Molecular Characterizations of the Coagulase-Negative Staphylococci Species Causing Urinary Tract Infection in Tanzania: A Laboratory-Based Cross-Sectional Study von Phillip, Shukrani, Mushi, Martha F, Decano, Arun Gonzales, Seni, Jeremiah, Mmbaga, Blandina T, Kumburu, Happiness, Konje, Eveline T, Mwanga, Joseph R, Kidenya, Benson R, Msemwa, Betrand, Gillespie, Stephen, Maldonado-Barragan, Antonio, Sandeman, Alison, Sabiti, Wilber, Holden, Mathew T G, Mshana, Stephen E

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Increased virulence of neuraminidase inhibitor-resistant pandemic H1N1 virus in mice: potential emergence of drug-resistant and virulent variants von Song, Min-Suk, Hee Baek, Yun, Kim, Eun-Ha, Park, Su-Jin, Kim, Semi, Lim, Gyo-Jin, Kwon, Hyeok-Il, Pascua, Philippe Noriel Q, Decano, Arun G, Lee, Byeong-Jae, Kim, Young-Il, Webby, Richard J, Choi, Young-Ki

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Genomics_talk_ARC-SYM_2018 von Decano, Arun

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Adjuvant Efficacy of mOMV against Avian Influenza Virus Infection in Mice von Lee, B.J., Chungbuk National University, Cheongju, Republic of Korea, Lee, S.H., Korea Research Institute of Bioscience and Biotechnology (KRIBB), Chungbuk, Republic of Korea, Song, M.S., Chungbuk National University, Cheongju, Republic of Korea, Pascua, P.N.Q., Chungbuk National University, Cheongju, Republic of Korea, Kwon, H.I., Chungbuk National University, Cheongju, Republic of Korea, Park, S.J., Chungbuk National University, Cheongju, Republic of Korea, Kim, E.H., Chungbuk National University, Cheongju, Republic of Korea, Decano, A., Chungbuk National University, Cheongju, Republic of Korea, Kim, S.M., Chungbuk National University, Cheongju, Republic of Korea, Lim, G.J., Chungbuk National University, Cheongju, Republic of Korea, Kim, D.J., Korea Research Institute of Bioscience and Biotechnology, Daejeon, Republic of Korea, Chang, K.T., Korea Research Institute of Bioscience and Biotechnology (KRIBB), Chungbuk, Republic of Korea, Kim, S.H., Korea Research Institute of Bioscience and Biotechnology (KRIBB), Chungbuk, Republic of Korea, Choi, Y.K., Chungbuk National University, Cheongju, Republic of Korea

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Complete Genome Sequences of Novel Reassortant H1N2 Swine Influenza Viruses Isolated from Pigs in the Republic of Korea von Pascua, Philippe Noriel Q, Lim, Gyo-Jin, Kwon, Hyeok-Il, Kim, Young-Il, Kim, Eun-Ha, Park, Su-Jin, Kim, Se Mi, Decano, Arun G, Choi, Eun-Ji, Jeon, Hae-Young, Kim, Chul-Joong, Choi, Young-Ki

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Genomic surveillance of Escherichia coli ST131 identifies local expansion and serial replacement of subclones von Ludden, Catherine, Decano, Arun Gonzales, Jamrozy, Dorota, Pickard, Derek, Morris, Dearbhaile, Parkhill, Julian, Peacock, Sharon J, Cormican, Martin, Downing, Tim

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The role of multidimensional poverty in antibiotic misuse: a mixed-methods study of self-medication and non-adherence in Kenya, Tanzania, and Uganda von Green, Dominique L, Keenan, Katherine, Fredricks, Kathryn J, Huque, Sarah I, Mushi, Martha F, Kansiime, Catherine, Asiimwe, Benon, Kiiru, John, Mshana, Stephen E, Neema, Stella, Mwanga, Joseph R, Kesby, Mike, Lynch, Andy G, Worthington, Hannah, Olamijuwon, Emmanuel, Abed Al Ahad, Mary, Aduda, Annette, Njeru, John Mwaniki, Mmbaga, Blandina T, Bazira, Joel, Sandeman, Alison, Stelling, John, Gillespie, Stephen H, Kibiki, Gibson, Sabiiti, Wilber, Sloan, Derek J, Holden, Matthew T G, Green, Dominique L, Keenan, Katherine, Fredricks, Kathryn J, Huque, Sarah I, Mushi, Martha F, Kansiime, Catherine, Asiimwe, Benon, Kiiru, John, Mshana, Stephen E, Neema, Stella, Mwanga, Joseph R, Kesby, Mike, Lynch, Andy G, Worthington, Hannah, Olamijuwon, Emmanuel, Abed Al Ahad, Mary, Aduda, Annette, Njeru, John Mwaniki, Mmbaga, Blandina T, Bazira, Joel, Sandeman, Alison, Stelling, John, Gillespie, Stephen H, Kibiki, Gibson, Sabiiti, Wilber, Sloan, Derek J, Holden, Matthew T G, Smith, V Anne, Decano, Arun Gonzales, Maldonado-Barragán, Antonio, Aanensen, David, Ntinginya, Nyanda E, Elliott, Alison, Clarkson, Madeleine

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Whole Genome Sequencing and Molecular Epidemiology of Clinical Isolates of IStaphylococcus aureus/I from Algeria von Namoune, Rachida, Djebbar, Abla, Mekler, Rebecca, McHugh, Ma, Bekara, Mohammed El Amine, Decano, Arun, Holden, Matthew T. G, Sebaihia, Mohammed

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Evaluation of sequence hybridization for respiratory viruses using the Twist Bioscience Respiratory Virus Research panel and the OneCodex Respiratory Virus sequence analysis workfl... von Kapel, Natalia, Kalimeris, Elizabeth, Lumley, Sheila, Decano, Arun, Rodger, Gillian, Lopes Alves, Marcela, Dingle, Kate, Oakley, Sarah, Barrett, Lucinda, Barnett, Sophie, Crook, Derrick, Eyre, David W, Matthews, Philippa C, Street, Teresa, Stoesser, Nicole

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Molecular Characterizations of the Coagulase-Negative IStaphylococci/I Species Causing Urinary Tract Infection in Tanzania: A Laboratory-Based Cross-Sectional Study von Phillip, Shukrani, Mushi, Martha F, Decano, Arun Gonzales, Seni, Jeremiah, Mmbaga, Blandina T, Kumburu, Happiness, Konje, Eveline T, Mwanga, Joseph R, Kidenya, Benson R, Msemwa, Betrand, Gillespie, Stephen, Maldonado-Barragan, Antonio, Sandeman, Alison, Sabiti, Wilber, Holden, Mathew T. G, Mshana, Stephen E

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Evaluation of heterosubtypic cross-protection against highly pathogenic H5N1 by active infection with human seasonal influenza A virus or trivalent inactivated vaccine immunization... von Park, Su-Jin, Kim, Eun-Ha, Pascua, Philippe Noriel Q, Kwon, Hyeok-Il, Lim, Gyo-Jin, Decano, Arun, Kim, Se Mi, Song, Man Ki, Shin, Eui-Cheol, Choi, Young-Ki

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Plasmids shape the diverse accessory resistomes of Escherichia coli ST131 von Decano, Arun Gonzales, Tran, Nghia, Al-Foori, Hawriya, Al-Awadi, Buthaina, Campbell, Leigh, Ellison, Kevin, Mirabueno, Louisse Paolo, Nelson, Maddy, Power, Shane, Smith, Genevieve, Smyth, Cian, Vance, Zoe, Woods, Caitriona, Rahm, Alexander, Downing, Tim

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Table 2 and 3 von Decano, Arun

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Supplementary Files-HATUA Pilot von Decano, Arun

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