Boolean implication analysis of single-cell data predicts retinal cell type markers von Subramanian, Rohan, Sahoo, Debashis

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Hoxb5 marks long-term haematopoietic stem cells and reveals a homogenous perivascular niche von Chen, James Y., Miyanishi, Masanori, Wang, Sean K., Yamazaki, Satoshi, Sinha, Rahul, Kao, Kevin S., Seita, Jun, Sahoo, Debashis, Nakauchi, Hiromitsu, Weissman, Irving L.

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CDX2 as a Prognostic Biomarker in Stage II and Stage III Colon Cancer von Dalerba, Piero, Sahoo, Debashis, Paik, Soonmyung, Guo, Xiangqian, Yothers, Greg, Song, Nan, Wilcox-Fogel, Nate, Forgó, Erna, Rajendran, Pradeep S, Miranda, Stephen P, Hisamori, Shigeo, Hutchison, Jacqueline, Kalisky, Tomer, Qian, Dalong, Wolmark, Norman, Fisher, George A, van de Rijn, Matt, Clarke, Michael F

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Fungal effectors, the double edge sword of phytopathogens von Pradhan, Amrita, Ghosh, Srayan, Sahoo, Debashis, Jha, Gopaljee

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Drug repurposing screens identify chemical entities for the development of COVID-19 interventions von Bakowski, Malina A., Beutler, Nathan, Wolff, Karen C., Kirkpatrick, Melanie G., Chen, Emily, Nguyen, Tu-Trinh H., Riva, Laura, Shaabani, Namir, Parren, Mara, Ricketts, James, Gupta, Anil K., Pan, Kastin, Kuo, Peiting, Fuller, MacKenzie, Garcia, Elijah, Teijaro, John R., Yang, Linlin, Sahoo, Debashis, Chi, Victor, Huang, Edward, Vargas, Natalia, Roberts, Amanda J., Das, Soumita, Ghosh, Pradipta, Woods, Ashley K., Joseph, Sean B., Hull, Mitchell V., Schultz, Peter G., Burton, Dennis R., Chatterjee, Arnab K., McNamara, Case W., Rogers, Thomas F.

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Identification of the Human Skeletal Stem Cell von Chan, Charles K.F., Gulati, Gunsagar S., Sinha, Rahul, Tompkins, Justin Vincent, Lopez, Michael, Carter, Ava C., Ransom, Ryan C., Reinisch, Andreas, Wearda, Taylor, Murphy, Matthew, Brewer, Rachel E., Koepke, Lauren S., Marecic, Owen, Manjunath, Anoop, Seo, Eun Young, Leavitt, Tripp, Lu, Wan-Jin, Nguyen, Allison, Conley, Stephanie D., Salhotra, Ankit, Ambrosi, Thomas H., Borrelli, Mimi R., Siebel, Taylor, Chan, Karen, Schallmoser, Katharina, Seita, Jun, Sahoo, Debashis, Goodnough, Henry, Bishop, Julius, Gardner, Michael, Majeti, Ravindra, Wan, Derrick C., Goodman, Stuart, Weissman, Irving L., Chang, Howard Y., Longaker, Michael T.

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Artificial intelligence guided discovery of a barrier-protective therapy in inflammatory bowel disease von Sahoo, Debashis, Swanson, Lee, Sayed, Ibrahim M., Katkar, Gajanan D., Ibeawuchi, Stella-Rita, Mittal, Yash, Pranadinata, Rama F., Tindle, Courtney, Fuller, Mackenzie, Stec, Dominik L., Chang, John T., Sandborn, William J., Das, Soumita, Ghosh, Pradipta

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Human bone marrow hematopoietic stem cells are increased in frequency and myeloid-biased with age von Pang, Wendy W, Price, Elizabeth A, Sahoo, Debashis, Beerman, Isabel, Maloney, William J, Rossi, Derrick J, Schrier, Stanley L, Weissman, Irving L

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Adult stem cell-derived complete lung organoid models emulate lung disease in COVID-19 von Tindle, Courtney, Fuller, MacKenzie, Fonseca, Ayden, Taheri, Sahar, Ibeawuchi, Stella-Rita, Beutler, Nathan, Katkar, Gajanan Dattatray, Claire, Amanraj, Castillo, Vanessa, Hernandez, Moises, Russo, Hana, Duran, Jason, Crotty Alexander, Laura E, Tipps, Ann, Lin, Grace, Thistlethwaite, Patricia A, Chattopadhyay, Ranajoy, Rogers, Thomas F, Sahoo, Debashis, Ghosh, Pradipta, Das, Soumita

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Quantitative mRNA expression measurement at home von Pandey, Sonalisa, McCoy, Sara Safa, Stobdan, Tsering, Sahoo, Debashis

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A Boolean approach for novel hypoxia-related gene discovery von Stobdan, Tsering, Sahoo, Debashis, Haddad, Gabriel G

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Unbiased Boolean analysis of public gene expression data for cell cycle gene identification von Dabydeen, Sarah A, Desai, Arshad, Sahoo, Debashis

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The PVT1 lncRNA is a novel epigenetic enhancer of MYC, and a promising risk-stratification biomarker in colorectal cancer von Shigeyasu, Kunitoshi, Toden, Shusuke, Ozawa, Tsuyoshi, Matsuyama, Takatoshi, Nagasaka, Takeshi, Ishikawa, Toshiaki, Sahoo, Debashis, Ghosh, Pradipta, Uetake, Hiroyuki, Fujiwara, Toshiyoshi, Goel, Ajay

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miR-221 Targets QKI to Enhance the Tumorigenic Capacity of Human Colorectal Cancer Stem Cells von Mukohyama, Junko, Isobe, Taichi, Hu, Qingjiang, Hayashi, Takanori, Watanabe, Takashi, Maeda, Masao, Yanagi, Hisano, Qian, Xin, Yamashita, Kimihiro, Minami, Hironobu, Mimori, Koshi, Sahoo, Debashis, Kakeji, Yoshihiro, Suzuki, Akira, Dalerba, Piero, Shimono, Yohei

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Artificial intelligence-guided discovery of gastric cancer continuum von Vo, Daniella, Ghosh, Pradipta, Sahoo, Debashis

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The genome sequence of the colonial chordate, Botryllus schlosseri von Voskoboynik, Ayelet, Neff, Norma F, Sahoo, Debashis, Newman, Aaron M, Pushkarev, Dmitry, Koh, Winston, Passarelli, Benedetto, Fan, H Christina, Mantalas, Gary L, Palmeri, Karla J, Ishizuka, Katherine J, Gissi, Carmela, Griggio, Francesca, Ben-Shlomo, Rachel, Corey, Daniel M, Penland, Lolita, White, 3rd, Richard A, Weissman, Irving L, Quake, Stephen R

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Single-cell dissection of transcriptional heterogeneity in human colon tumors von Dalerba, Piero, Kalisky, Tomer, Sahoo, Debashis, Rajendran, Pradeep S, Rothenberg, Michael E, Leyrat, Anne A, Sim, Sopheak, Okamoto, Jennifer, Johnston, Darius M, Qian, Dalong, Zabala, Maider, Bueno, Janet, Neff, Norma F, Wang, Jianbin, Shelton, Andrew A, Visser, Brendan, Hisamori, Shigeo, Shimono, Yohei, van de Wetering, Marc, Clevers, Hans, Clarke, Michael F, Quake, Stephen R

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Boolean implication analysis unveils candidate universal relationships in microbiome data von Vo, Daniella, Singh, Shayal Charisma, Safa, Sara, Sahoo, Debashis

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Rescue of Alzheimer’s disease phenotype in a mouse model by transplantation of wild-type hematopoietic stem and progenitor cells von Mishra, Priyanka, Silva, Alexander, Sharma, Jay, Nguyen, Jacqueline, Pizzo, Donald P., Hinz, Denise, Sahoo, Debashis, Cherqui, Stephanie

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An Artificial Intelligence-guided signature reveals the shared host immune response in MIS-C and Kawasaki disease von Ghosh, Pradipta, Katkar, Gajanan D., Shimizu, Chisato, Kim, Jihoon, Khandelwal, Soni, Tremoulet, Adriana H., Kanegaye, John T., Bocchini, Joseph, Das, Soumita, Burns, Jane C., Sahoo, Debashis

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