HINCUTs in cancer: hypoxia-induced noncoding ultraconserved transcripts von Ferdin, J, Nishida, N, Wu, X, Nicoloso, M S, Shah, M Y, Devlin, C, Ling, H, Shimizu, M, Kumar, K, Cortez, M A, Ferracin, M, Bi, Y, Yang, D, Czerniak, B, Zhang, W, Schmittgen, T D, Voorhoeve, M P, Reginato, M J, Negrini, M, Davuluri, R V, Kunej, T, Ivan, M, Calin, G A

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RP58/ZNF238 directly modulates proneurogenic gene levels and is required for neuronal differentiation and brain expansion von Xiang, C, Baubet, V, Pal, S, Holderbaum, L, Tatard, V, Jiang, P, Davuluri, R V, Dahmane, N

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CART classification of human 5' UTR sequences von Davuluri, R V, Suzuki, Y, Sugano, S, Zhang, M Q

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A microRNA component of the hypoxic response von Kulshreshtha, R, Davuluri, R V, Calin, G A, Ivan, M

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Computational identification of promoters and first exons in the human genome von Zhang, Michael Q, Davuluri, Ramana V, Grosse, Ivo

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PML Is a Direct p53 Target that Modulates p53 Effector Functions von de Stanchina, Elisa, Querido, Emmanuelle, Narita, Masako, Davuluri, Ramana V, Pandolfi, Pier Paolo, Ferbeyre, Gerardo, Lowe, Scott W

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Direct coupling of the cell cycle and cell death machinery by E2F von Lowe, Scott W, Nahle, Zaher, Polakoff, Julia, Davuluri, Ramana V, McCurrach, Mila E, Jacobson, Matthew D, Narita, Masashi, Zhang, Michael Q, Lazebnik, Yuri, Bar-Sagi, Dafna

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ERTargetDB: an integral information resource of transcription regulation of estrogen receptor target genes von Jin, V X, Sun, H, Pohar, T T, Liyanarachchi, S, Palaniswamy, S K, Huang, T H-M, Davuluri, R V

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Role of cancer-associated stromal fibroblasts in metastatic colon cancer to the liver and their expression profiles von NAKAGAWA, Hidewaki, LIYANARACHCHI, Sandya, DAVULURI, Ramana V, AUER, Herbert, MARTIN, Edward W, DE LA CHAPELLE, Albert, FRANKEL, Wendy L

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Acute Myeloid Leukemia with Complex Karyotypes and Abnormal Chromosome 21: Amplification Discloses Overexpression of APP, ETS2, and ERG Genes von Baldus, Claudia D, Liyanarachchi, Sandya, Mrózek, Krzysztof, Auer, Herbert, Tanner, Stephan M, Guimond, Martin, Ruppert, Amy S, Mohamed, Nehad, Davuluri, Ramana V, Caligiuri, Michael A, Bloomfield, Clara D, de la Chapelle, Albert

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The functional consequences of alternative promoter use in mammalian genomes von Davuluri, Ramana V, Suzuki, Yutaka, Sugano, Sumio, Plass, Christoph, Huang, Tim H.-M

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Estimation of Gene Expression at Isoform Level from mRNA-Seq Data by Bayesian Hierarchical Modeling von Bhattacharjee, M, Gupta, Ravi, Davuluri, R V

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Java-based application framework for visualization of gene regulatory region annotations von Sun, Hao, Davuluri, Ramana V.

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AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors von Davuluri, Ramana V, Sun, Hao, Palaniswamy, Saranyan K, Matthews, Nicole, Molina, Carlos, Kurtz, Mike, Grotewold, Erich

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A NotI– EcoRV promoter library for studies of genetic and epigenetic alterations in mouse models of human malignancies von Yu, Li, Liu, Chunhui, Bennett, Kristi, Wu, Yue-Zhong, Dai, Zunyan, Vandeusen, Jeff, Opavsky, Rene, Raval, Aparna, Trikha, Prashant, Rodriguez, Ben, Becknell, Brian, Mao, Charlene, Lee, Stephen, Davuluri, Ramana V., Leone, Gustavo, Van den Veyver, Ignatia B., Caligiuri, Michael A., Plass, Christoph

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AGRIS and AtRegNet. A Platform to Link cis-Regulatory Elements and Transcription Factors into Regulatory Networks von Palaniswamy, Saranyan K, James, Stephen, Sun, Hao, Lamb, Rebecca S, Davuluri, Ramana V, Grotewold, Erich

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Computational identification of promoters and first exons in the human genome von Davuluri, R V, Grosse, I, Zhang, M Q

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Loss of estrogen receptor signaling triggers epigenetic silencing of downstream targets in breast cancer von LEU, Yu-Wei, YAN, Pearlly S, NEPHEW, Kenneth P, HUANG, Tim H-M, MEIYUN FAN, JIN, Victor X, LIU, Joseph C, CURRAN, Edward M, WELSHONS, Wade V, WEI, Susan H, DAVULURI, Ramana V, PLASS, Christoph

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Prognostic DNA Methylation Biomarkers in Ovarian Cancer von WEI, Susan H, BALCH, Curtis, KARLAN, Beth Y, GIFFORD, Gillian, BROWN, Robert, KIM, Sun, HUANG, Tim H-M, NEPHEW, Kenneth P, PAIK, Henry H, KIM, Yoo-Sung, BALDWIN, Rae Lynn, LIYANARACHCHI, Sandya, LANG LI, ZAILONG WANG, WAN, Joseph C, DAVULURI, Ramana V

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Papillary and Follicular Thyroid Carcinomas Show Distinctly Different Microarray Expression Profiles and Can Be Distinguished by a Minimum of Five Genes von ALDRED, Micheala A, YING HUANG, LIYANARACHCHI, Sandya, PELLEGATA, Natalia S, GIMM, Oliver, JHIANG, Sissy, DAVULURI, Ramana V, DE LA CHAPELLE, Albert, ENG, Charis

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