Selection for short introns in highly expressed genes von Kondrashov, Fyodor A, Castillo-Davis, Cristian I, Mekhedov, Sergei L, Hartl, Daniel L, Koonin, Eugene V

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The functional genomic distribution of protein divergence in two animal phyla: coevolution, genomic conflict, and constraint von Castillo-Davis, Cristian I, Kondrashov, Fyodor A, Hartl, Daniel L, Kulathinal, Rob J

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Sex-Dependent Gene Expression and Evolution of the Drosophila Transcriptome von Ranz, José M., Castillo-Davis, Cristian I., Meiklejohn, Colin D., Hartl, Daniel L.

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GeneMerge-post-genomic analysis, data mining, and hypothesis testing von CASTILLO-DAVIS, Cristian I, HARTL, Daniel L

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A data-driven clustering method for time course gene expression data von Ma, Ping, Castillo-Davis, Cristian I., Zhong, Wenxuan, Liu, Jun S.

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Systems-level analysis and evolution of the phototransduction network in Drosophila von Landry, Christian R, Castillo-Davis, Cristian I, Ogura, Atsushi, Liu, Jun S, Hartl, Daniel L

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cis-Regulatory and protein evolution in orthologous and duplicate genes von Castillo-Davis, Cristian I, Hartl, Daniel L, Achaz, Guillaume

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Genetic Diversity in Yeast Assessed With Whole-Genome Oligonucleotide Arrays von Winzeler, Elizabeth A, Castillo-Davis, Cristian I, Oshiro, Guy, Liang, David, Richards, Daniel R, Zhou, Yingyao, Hartl, Daniel L

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The evolution of noncoding DNA: how much junk, how much func? von CASTILLODAVIS, C

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Genome evolution and developmental constraint in Caenorhabditis elegans von Castillo-Davis, Cristian I, Hartl, Daniel L

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Accelerated rates of intron gain/loss and protein evolution in duplicate genes in human and mouse malaria parasites von Castillo-Davis, Cristian I, Bedford, Trevor B C, Hartl, Daniel L

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Conservation, relocation and duplication in genome evolution von Castillo-Davis, Cristian I., Hartl, Daniel L.

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GeneMerge—post-genomic analysis, datamining, and hypothesis testing von Castillo-Davis, Cristian I., Hartl, Daniel L.

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Deposition and germination of conidia of the entomopathogen Entomophaga maimaiga infecting larvae of gypsy moth, Lymantria dispar von Hajek, Ann E., Davis, Cristian I., Eastburn, Callie C., Vermeylen, Francoise M.

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A Data-Driven Clustering Method for Time Course Gene Expression Data von Ma, Ping, Castillo-Davis, Cristian I, Zhong, Wenxuan, Liu, Jun

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Estimated mean curves and 95% confidence bands for one of each the 4 functions of the 100 simulated time series datasets von Ma, Ping, I. Castillo-Davis, Cristian, Zhong, Wenxuan, S. Liu, Jun

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Estimated mean expression curves (solid lines) and 95% confidence bands (grey bands) for four of 17 clusters discovered by SSC in the (fly) time course microarray data () von Ma, Ping, I. Castillo-Davis, Cristian, Zhong, Wenxuan, S. Liu, Jun

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Estimated mean expression curves (solid lines) and 95% confidence bands (grey bands) for three of 16 clusters discovered by SSC in the (worm) time course microarray data () von Ma, Ping, I. Castillo-Davis, Cristian, Zhong, Wenxuan, S. Liu, Jun

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Curve fitting with an arbitrary function showing over-fitting, a least squares fit, and curve fitting with a smoothing spline von Ma, Ping, I. Castillo-Davis, Cristian, Zhong, Wenxuan, S. Liu, Jun

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Mixed-effect model representation of gene expression over time von Ma, Ping, I. Castillo-Davis, Cristian, Zhong, Wenxuan, S. Liu, Jun

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